RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SRLQ86TD4 932 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 MMAAQ8IVH4 418 aaKnown RBP19.96■□□□□ 0.79
UPF3A-211ENST00000618700 FAM71DQ8N9W8 422 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 TMIEQ8NEW7 156 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 ARRDC2Q8TBH0 407 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 GRIN3AQ8TCU5 1115 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 LRIG1Q96JA1 1093 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 AGAP3Q96P47 875 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 TUBGCP5Q96RT8 1024 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 CPEB1Q9BZB8 566 aaKnown RBP19.96■□□□□ 0.79
UPF3A-211ENST00000618700 ZDHHC6Q9H6R6 413 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 EBF1Q9UH73 591 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 FBXO4Q9UKT5 387 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 SARDHQ9UL12 918 aa19.96■□□□□ 0.79
UPF3A-211ENST00000618700 GOLGA6L10A0A0M3HER8 536 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 C5orf60A6NFR6 353 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 ZNF500O60304 480 aaPredicted RBP19.95■□□□□ 0.78
UPF3A-211ENST00000618700 ADH1BP00325 375 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 CD68P34810 354 aaPredicted RBP19.95■□□□□ 0.78
UPF3A-211ENST00000618700 PSMD8P48556 350 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 SCNN1BP51168 640 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 DSC2Q02487 901 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 NIPAL4Q0D2K0 466 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 GRM3Q14832 879 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 TTC27Q6P3X3 843 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 RYBPQ8N488 228 aaPredicted RBP19.95■□□□□ 0.78
UPF3A-211ENST00000618700 PIP4K2CQ8TBX8 421 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 ZNF592Q92610 1267 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 SIPA1Q96FS4 1042 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 SPATA13Q96N96 652 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 SEMA3CQ99985 751 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 NOD2Q9HC29 1040 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 KLHL8Q9P2G9 620 aaPredicted RBP19.95■□□□□ 0.78
UPF3A-211ENST00000618700 ZNF148Q9UQR1 794 aa19.95■□□□□ 0.78
UPF3A-211ENST00000618700 DRG1Q9Y295 367 aaKnown RBP19.95■□□□□ 0.78
UPF3A-211ENST00000618700 CCDC163A0A0D9SF12 145 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 TTC24A2A3L6 582 aaPredicted RBP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 ESPNB1AK53 854 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 C1QTNF3-AMACRE9PGA6 284 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 MID1O15344 667 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 ZBTB24O43167 697 aaPredicted RBP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 OPHN1O60890 802 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 PHF2O75151 1096 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 STK10O94804 968 aaKnown RBP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 IL1BP01584 269 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 MMP2P08253 660 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 CES1P23141 567 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 STIP1P31948 543 aaKnown RBP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 PAFAH1B1P43034 410 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 METAP1P53582 386 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 RAD51Q06609 339 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 IHHQ14623 411 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 ARSIQ5FYB1 569 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 ANKRD20A2Q5SQ80 823 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 ANKRD20A1Q5TYW2 823 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 ANKRD20A3Q5VUR7 823 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 TSSK4Q6SA08 328 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 KIAA1324Q6UXG2 1013 aaKnown RBP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 CACUL1Q86Y37 369 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 KIF18AQ8NI77 898 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 PRCCQ92733 491 aaPredicted RBP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 OSBPL1AQ9BXW6 950 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 SLC25A51Q9H1U9 297 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 PABPC3Q9H361 631 aaKnown RBP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 ATP13A3Q9H7F0 1226 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 GLOD4Q9HC38 313 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 USP36Q9P275 1121 aaKnown RBP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 BCCIPQ9P287 314 aaKnown RBP eCLIP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 TTLL3Q9Y4R7 772 aa19.94■□□□□ 0.78
UPF3A-211ENST00000618700 ARIH1Q9Y4X5 557 aaPredicted RBP19.94■□□□□ 0.78
UPF3A-211ENST00000618700 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.93■□□□□ 0.78
UPF3A-211ENST00000618700 SOCS5O75159 536 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 GCATO75600 419 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 URI1O94763 535 aaPredicted RBP19.93■□□□□ 0.78
UPF3A-211ENST00000618700 PIGNO95427 931 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 NFKB1P19838 968 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 C5AR1P21730 350 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 SLC8A1P32418 973 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 DRD3P35462 400 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 KCNJ1P48048 391 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 PXNP49023 591 aaPredicted RBP19.93■□□□□ 0.78
UPF3A-211ENST00000618700 FNTAP49354 379 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 CSTF1Q05048 431 aaKnown RBP19.93■□□□□ 0.78
UPF3A-211ENST00000618700 ITKQ08881 620 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 DMWDQ09019 674 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 FAM46CQ5VWP2 391 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 PID1Q7Z2X4 250 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 AADATQ8N5Z0 425 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 CCDC110Q8TBZ0 833 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 NELL1Q92832 810 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 MAGOHBQ96A72 148 aaKnown RBP19.93■□□□□ 0.78
UPF3A-211ENST00000618700 FAM131CQ96AQ9 280 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 TADA1Q96BN2 335 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 IMP4Q96G21 291 aaKnown RBP19.93■□□□□ 0.78
UPF3A-211ENST00000618700 GBA3Q9H227 469 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 KCNH6Q9H252 994 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 CDC23Q9UJX2 597 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 SCML1Q9UN30 329 aa19.93■□□□□ 0.78
UPF3A-211ENST00000618700 TRAFD1O14545 582 aaPredicted RBP19.92■□□□□ 0.78
UPF3A-211ENST00000618700 IGLV3-19P01714 112 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms