RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 RIMBP3Q9UFD9 1639 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 IFRD1O00458 451 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-212ENST00000616140 CILPO75339 1184 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 ABL2P42684 1182 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 IDH2P48735 452 aaKnown RBP14.13□□□□□ -0.15
CPSF1-212ENST00000616140 SLC7A2P52569 658 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 BTG3Q14201 252 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-212ENST00000616140 FGD3Q5JSP0 725 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 GRHL1Q9NZI5 618 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 VWA7Q9Y334 891 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 EME2A4GXA9 379 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-212ENST00000616140 DGKAP23743 735 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 CENPAP49450 140 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 ASTE1Q2TB18 679 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-212ENST00000616140 FNBP1LQ5T0N5 605 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 ARHGAP22Q7Z5H3 698 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 CLPTM1LQ96KA5 538 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 CEP44Q9C0F1 390 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 DHX33Q9H6R0 707 aaKnown RBP14.13□□□□□ -0.15
CPSF1-212ENST00000616140 ADPRHL2Q9NX46 363 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 EGFL7Q9UHF1 273 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 LEF1Q9UJU2 399 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-212ENST00000616140 SPACA6W5XKT8 324 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 BCL9LQ86UU0 1499 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 TRIM24O15164 1050 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 ULK1O75385 1050 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 ANXA5P08758 320 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 PLD1Q13393 1074 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 RIPK1Q13546 671 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 GSTA3Q16772 222 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 RNASEH2BQ5TBB1 312 aaKnown RBP14.13□□□□□ -0.15
CPSF1-212ENST00000616140 TTC23Q5W5X9 447 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 TPGS1Q6ZTW0 290 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 LRRC49Q8IUZ0 686 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 ADHFE1Q8IWW8 467 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 SOCS4Q8WXH5 440 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 KLHL5Q96PQ7 755 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 BPIFA1Q9NP55 256 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 CHKBQ9Y259 395 aa14.13□□□□□ -0.15
CPSF1-212ENST00000616140 HBS1LQ9Y450 684 aaKnown RBP14.13□□□□□ -0.15
CPSF1-212ENST00000616140 NID2Q14112 1375 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 MED26O95402 600 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 SERPINA4P29622 427 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 ADARP55265 1226 aaKnown RBP14.12□□□□□ -0.15
CPSF1-212ENST00000616140 FAM187BQ17R55 369 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 LACTB2Q53H82 288 aaPredicted RBP14.12□□□□□ -0.15
CPSF1-212ENST00000616140 CACUL1Q86Y37 369 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 C8orf59Q8N0T1 100 aaPredicted RBP14.12□□□□□ -0.15
CPSF1-212ENST00000616140 KLRG1Q96E93 195 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 C1orf50Q9BV19 199 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 REEP1Q9H902 201 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 SIX2Q9NPC8 291 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 ACSS2Q9NR19 701 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 ST3GAL5Q9UNP4 418 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 PTCH2Q9Y6C5 1203 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 PCDH8O95206 1070 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 CHRNB2P17787 502 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 PTGIRP43119 386 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 KLF10Q13118 480 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 GCNT7Q6ZNI0 430 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 SH3BP5LQ7L8J4 393 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 CPNE8Q86YQ8 564 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 TFAP2BQ92481 460 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 ZFP42Q96MM3 310 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 POLR1BQ9H9Y6 1135 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 KLHL28Q9NXS3 571 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 AP4B1Q9Y6B7 739 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 RPTORQ8N122 1335 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 AZIN1O14977 448 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 RNASEH1O60930 286 aaKnown RBP14.12□□□□□ -0.15
CPSF1-212ENST00000616140 CATP04040 527 aaKnown RBP14.12□□□□□ -0.15
CPSF1-212ENST00000616140 CKBP12277 381 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 VCLP18206 1134 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 ST13P50502 369 aaKnown RBP14.12□□□□□ -0.15
CPSF1-212ENST00000616140 NR1H2P55055 460 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 PTP4A2Q12974 167 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 TEX44Q53QW1 395 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 ZBTB46Q86UZ6 589 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 NDRG1Q92597 394 aaKnown RBP14.12□□□□□ -0.15
CPSF1-212ENST00000616140 NACC2Q96BF6 587 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 TEKT5Q96M29 485 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 GPR20Q99678 358 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 CDH19Q9H159 772 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 PRPF19Q9UMS4 504 aaKnown RBP14.12□□□□□ -0.15
CPSF1-212ENST00000616140 MRC1P22897 1456 aa14.12□□□□□ -0.15
CPSF1-212ENST00000616140 MANSC4A6NHS7 340 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 DARSP14868 501 aaKnown RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 MPSTP25325 297 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 BRCC3P46736 316 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 TTPAP49638 278 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 PSMD7P51665 324 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 CDK18Q07002 472 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 PCBP1Q15365 356 aaKnown RBP eCLIP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 ANGPT1Q15389 498 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 PMF1Q6P1K2 205 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 ADGRD1Q6QNK2 874 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 ARHGAP36Q6ZRI8 547 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 CLYBLQ8N0X4 340 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 RDH11Q8TC12 318 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms