RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 HMOX2P30519 316 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 CCR1P32246 355 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 TMED10P49755 219 aaKnown RBP12.72□□□□□ -0.37
LIG1-221ENST00000613670 PRKAA2P54646 552 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 FRG1Q14331 258 aaKnown RBP12.72□□□□□ -0.37
LIG1-221ENST00000613670 PFKFB4Q16877 469 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 HFE2Q6ZVN8 426 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 CANT1Q8WVQ1 401 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 EMID1Q96A84 441 aaPredicted RBP12.72□□□□□ -0.37
LIG1-221ENST00000613670 TMIGD2Q96BF3 282 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 RMDN1Q96DB5 314 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 KLRG1Q96E93 195 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 CCDC126Q96EE4 140 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 PLEKHG4BQ96PX9 1271 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 FZD10Q9ULW2 581 aa12.72□□□□□ -0.37
LIG1-221ENST00000613670 DHRS12A0PJE2 317 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 PABPN1LA6NDY0 278 aaKnown RBP12.71□□□□□ -0.37
LIG1-221ENST00000613670 DPYSL4O14531 572 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 TSPAN1O60635 241 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 TFAP2AP05549 437 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 OCM2P0CE71 109 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 OCMP0CE72 109 aaPredicted RBP12.71□□□□□ -0.37
LIG1-221ENST00000613670 PCNAP12004 261 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 NR4A1P22736 598 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 PNPLA4P41247 253 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 PSMD7P51665 324 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 SLC5A3P53794 718 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 TAZQ16635 292 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 TRIM16LQ309B1 348 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 VPS26BQ4G0F5 336 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 OGFRL1Q5TC84 451 aaPredicted RBP12.71□□□□□ -0.37
LIG1-221ENST00000613670 CNTD1Q8N815 330 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 ACVR1CQ8NER5 493 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 HEXDCQ8WVB3 486 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 DNAJB3Q8WWF6 145 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 PIGVQ9NUD9 493 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 HEMK1Q9Y5R4 338 aaPredicted RBP12.71□□□□□ -0.37
LIG1-221ENST00000613670 NHSL1Q5SYE7 1610 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 CHRNA4P43681 627 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 CDKL1Q00532 357 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 SQLEQ14534 574 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 C9orf57Q5W0N0 161 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 REP15Q6BDI9 236 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 MOB2Q70IA6 237 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 STK32CQ86UX6 486 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 TCF12Q99081 682 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 MRPL57Q9BQC6 102 aaKnown RBP12.71□□□□□ -0.37
LIG1-221ENST00000613670 TRAF6Q9Y4K3 522 aa12.71□□□□□ -0.37
LIG1-221ENST00000613670 PARNO95453 639 aaKnown RBP12.71□□□□□ -0.38
LIG1-221ENST00000613670 AHSGP02765 367 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 UGT1A6P19224 532 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 GRIK1P39086 918 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 NIPAL4Q0D2K0 466 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 ITGADQ13349 1161 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 STXBP5Q5T5C0 1151 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 MARVELD2Q8N4S9 558 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 UNC93B1Q9H1C4 597 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 PLGRKTQ9HBL7 147 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 TIMMDC1Q9NPL8 285 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 BAG5Q9UL15 447 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 ORC6Q9Y5N6 252 aa12.71□□□□□ -0.38
LIG1-221ENST00000613670 GOLGB1Q14789 3259 aaKnown RBP12.71□□□□□ -0.38
LIG1-221ENST00000613670 CASTOR2A6NHX0 329 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 PLSCR1O15162 318 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 KDM1AO60341 852 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 PIRTP0C851 137 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 YWHAQP27348 245 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 MGAT5BQ3V5L5 792 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 PGM2L1Q6PCE3 622 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 TMCO5AQ8N6Q1 288 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 RIN3Q8TB24 985 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 TRPM4Q8TD43 1214 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 TRPC4APQ8TEL6 797 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 PRICKLE1Q96MT3 831 aaPredicted RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 KCTD14Q9BQ13 255 aaPredicted RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 DGCR6LQ9BY27 220 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 TRIM8Q9BZR9 551 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 FBRSL1Q9HCM7 1045 aaKnown RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 SEMA4BQ9NPR2 832 aaPredicted RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 NOD1Q9Y239 953 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 CITO14578 2027 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 PTGES3LE9PB15 166 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 F9P00740 461 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 TFPTP0C1Z6 253 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 ATP6V1B2P21281 511 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 RPL10P27635 214 aaKnown RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 RXRBP28702 533 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 YAP1P46937 504 aaKnown RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 PPP1R3AQ16821 1122 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 ANKRD23Q86SG2 305 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 TNIP2Q8NFZ5 429 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 CDC26Q8NHZ8 85 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 RDH11Q8TC12 318 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 SKA2Q8WVK7 121 aaPredicted RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 ARNTL2Q8WYA1 636 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 RTP4Q96DX8 246 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 RGS18Q9NS28 235 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 YJEFN3A6XGL0 299 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 FAM72CH0Y354 149 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 B3GAT3O94766 335 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms