RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 RHOXF2Q9BQY4 288 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 LRRC1Q9BTT6 524 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 TMEM245Q9H330 911 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 KIAA1522Q9P206 1035 aaPredicted RBP12.93□□□□□ -0.34
UPF1-208ENST00000600012 SLC12A6Q9UHW9 1150 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 VANGL2Q9ULK5 521 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 PLA2G4CQ9UP65 541 aa12.93□□□□□ -0.34
UPF1-208ENST00000600012 CHD5Q8TDI0 1954 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 UQCRHLA0A096LP55 91 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 A0A1B0GVT2 93 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 E9PAM4 449 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 RAD51CO43502 376 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 LIASO43766 372 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 MFSD11O43934 449 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 ACSL4O60488 711 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 TSPAN3O60637 253 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 UQCRHP07919 91 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 PABPC1P11940 636 aaKnown RBP12.92□□□□□ -0.34
UPF1-208ENST00000600012 TACR2P21452 398 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 TGM2P21980 687 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 EPHB2P29323 1055 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 CHRNA3P32297 505 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 COILP38432 576 aaPredicted RBP12.92□□□□□ -0.34
UPF1-208ENST00000600012 IRAK1P51617 712 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 GBE1Q04446 702 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 ZBTB16Q05516 673 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 TEAD4Q15561 434 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 ARTNQ5T4W7 220 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 ADGRF1Q5T601 910 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 RWDD4Q6NW29 188 aaKnown RBP12.92□□□□□ -0.34
UPF1-208ENST00000600012 CCDC137Q6PK04 289 aaKnown RBP12.92□□□□□ -0.34
UPF1-208ENST00000600012 DBX2Q6ZNG2 339 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 CHST9Q7L1S5 443 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 SLCO6A1Q86UG4 719 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 UNC45BQ8IWX7 931 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 ZNF683Q8IZ20 524 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.92□□□□□ -0.34
UPF1-208ENST00000600012 BAHD1Q8TBE0 780 aaPredicted RBP12.92□□□□□ -0.34
UPF1-208ENST00000600012 CYB5D2Q8WUJ1 264 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 TMA16Q96EY4 203 aaKnown RBP12.92□□□□□ -0.34
UPF1-208ENST00000600012 CCDC86Q9H6F5 360 aaKnown RBP12.92□□□□□ -0.34
UPF1-208ENST00000600012 LRRC19Q9H756 370 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 ABCB8Q9NUT2 735 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 AMACRQ9UHK6 382 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 GGA2Q9UJY4 613 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 DNPEPQ9ULA0 475 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.92□□□□□ -0.34
UPF1-208ENST00000600012 HEY1Q9Y5J3 304 aa12.92□□□□□ -0.34
UPF1-208ENST00000600012 DSPP15924 2871 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 WDFY3Q8IZQ1 3526 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 TTI1O43156 1089 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 CTIFO43310 598 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 SEMA4FO95754 770 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 DNTTP04053 509 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 ATP5BP06576 529 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 DLDP09622 509 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 SLC6A4P31645 630 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 ACSL1P33121 698 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 PTGIRP43119 386 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 GRIA4P48058 902 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 HCAR3P49019 387 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 FNTAP49354 379 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 CSNK1EP49674 416 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 ZNF135P52742 658 aaPredicted RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 EIF3EP60228 445 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 SLC7A5Q01650 507 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 NRG1Q02297 640 aaPredicted RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 AUHQ13825 339 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 SUZ12Q15022 739 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 NOMO1Q15155 1222 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 CCNG2Q16589 344 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 TTC31Q49AM3 519 aaPredicted RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 FAM133BQ5BKY9 247 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 MPP7Q5T2T1 576 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 MBLAC2Q68D91 279 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 B4GALNT4Q76KP1 1039 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 KIAA0907Q7Z7F0 614 aaPredicted RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 ADIPOR2Q86V24 386 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 CIR1Q86X95 450 aaPredicted RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 ZNF366Q8N895 744 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 ZNF557Q8N988 423 aaPredicted RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 TTC13Q8NBP0 860 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 RHBDD1Q8TEB9 315 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 P3H4Q92791 437 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 MYEOVQ96EZ4 313 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 CCDC114Q96M63 670 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 PRMT1Q99873 361 aaKnown RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 TRIM51Q9BSJ1 452 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 BTBD1Q9H0C5 482 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 C6orf106Q9H6K1 298 aaPredicted RBP12.91□□□□□ -0.34
UPF1-208ENST00000600012 PRSS16Q9NQE7 514 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 GPSM3Q9Y4H4 160 aa12.91□□□□□ -0.34
UPF1-208ENST00000600012 KNTC1P50748 2209 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 MCF2LO15068 1137 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 ZFXP17010 805 aaPredicted RBP12.9□□□□□ -0.34
UPF1-208ENST00000600012 POLR2EP19388 210 aaKnown RBP12.9□□□□□ -0.34
UPF1-208ENST00000600012 SLC11A2P49281 568 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 RPS14P62263 151 aaKnown RBP12.9□□□□□ -0.34
UPF1-208ENST00000600012 SLC10A2Q12908 348 aaPredicted RBP12.9□□□□□ -0.34
UPF1-208ENST00000600012 PAFAH1B3Q15102 231 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms