RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 DFFAO00273 331 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 KRIT1O00522 736 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 AREL1O15033 823 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 VILLO15195 856 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 MFSD11O43934 449 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 NDUFA10O95299 355 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 UGT2B4P06133 528 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 SLC1A1P43005 524 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 MAGEA1P43355 309 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 MAPK8P45983 427 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 CSNK1EP49674 416 aaKnown RBP16.35■□□□□ 0.21
TRIM28-213ENST00000598355 GRM3Q14832 879 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 ZNF284Q2VY69 593 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 TMCO4Q5TGY1 634 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 PIP4P1Q86T03 277 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 HORMAD1Q86X24 394 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 TMTC1Q8IUR5 882 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 LRRC49Q8IUZ0 686 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 PQLC3Q8N755 202 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 TSEN2Q8NCE0 465 aaKnown RBP16.35■□□□□ 0.21
TRIM28-213ENST00000598355 OR2I1PQ8NGU4 316 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 SPOCK2Q92563 424 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 EXOC2Q96KP1 924 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 TUBGCP5Q96RT8 1024 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 ANP32EQ9BTT0 268 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 KLHL11Q9NVR0 708 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 IMPACTQ9P2X3 320 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 ZFR2Q9UPR6 939 aaKnown RBP16.35■□□□□ 0.21
TRIM28-213ENST00000598355 COL5A1P20908 1838 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-213ENST00000598355 DCDC2BA2VCK2 349 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 C16orf96A6NNT2 1141 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 WNT9AO14904 365 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 MUSKO15146 869 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 INSIG1O15503 277 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 RNGTTO60942 597 aaKnown RBP16.34■□□□□ 0.21
TRIM28-213ENST00000598355 CER1O95813 267 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 WNT1P04628 370 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 CR2P20023 1033 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 CSRP1P21291 193 aaKnown RBP16.34■□□□□ 0.21
TRIM28-213ENST00000598355 KDELR1P24390 212 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 GJC1P36383 396 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 CTSKP43235 329 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 SSR1P43307 286 aaKnown RBP16.34■□□□□ 0.21
TRIM28-213ENST00000598355 RAD51Q06609 339 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 NSUN2Q08J23 767 aaKnown RBP eCLIP16.34■□□□□ 0.21
TRIM28-213ENST00000598355 GALNT2Q10471 571 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 SLC14A1Q13336 389 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 TEAD4Q15561 434 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 SETMARQ53H47 684 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-213ENST00000598355 ANKRD20A8PQ5CZ79 823 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 KIAA1161Q6NSJ0 714 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 IL27RAQ6UWB1 636 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 LAYNQ6UX15 382 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 GDPD4Q6W3E5 623 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 RAD9BQ6WBX8 426 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 MAP7D3Q8IWC1 876 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 HCAR2Q8TDS4 363 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 RAPGEF5Q92565 580 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 FATE1Q969F0 183 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 KLHL32Q96NJ5 620 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 GTPBP2Q9BX10 602 aaKnown RBP16.34■□□□□ 0.21
TRIM28-213ENST00000598355 CALN1Q9BXU9 219 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 ANKRD6Q9Y2G4 727 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 REXO2Q9Y3B8 237 aaKnown RBP16.34■□□□□ 0.21
TRIM28-213ENST00000598355 PCDHA13Q9Y5I0 950 aa16.34■□□□□ 0.21
TRIM28-213ENST00000598355 EPN1Q9Y6I3 576 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-213ENST00000598355 A0A1W2PQU0 124 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 RCCD1A6NED2 376 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 TMEM110-MUSTN1A8MSY1 372 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 BUB1BO60566 1050 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 OPHN1O60890 802 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 PALMO75781 387 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 CD59P13987 128 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 CD38P28907 300 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 GARSP41250 739 aaKnown RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 ATXN3P54252 364 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 SLC10A7Q0GE19 358 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 LBRQ14739 615 aaKnown RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 ZNF423Q2M1K9 1284 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 KIF19Q2TAC6 998 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 C11orf63Q6NUN7 778 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 FBXL19Q6PCT2 694 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 PRPF39Q86UA1 669 aaKnown RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 IQCHQ86VS3 1027 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 RYBPQ8N488 228 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 ATPAF2Q8N5M1 289 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 KCTD6Q8NC69 237 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 ECHDC3Q96DC8 303 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 SERAC1Q96JX3 654 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 NSMCE3Q96MG7 304 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 ZNF641Q96N77 438 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 MGME1Q9BQP7 344 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 CINPQ9BW66 212 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 LUC7LQ9NQ29 371 aaKnown RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 SEPT3Q9UH03 358 aa16.33■□□□□ 0.2
TRIM28-213ENST00000598355 FNDC3AQ9Y2H6 1198 aaKnown RBP16.33■□□□□ 0.2
TRIM28-213ENST00000598355 BTNL10A8MVZ5 291 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 PRAMEF26H0Y7S4 382 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 TSPAN6O43657 245 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 LRP4O75096 1905 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms