RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SERINC3Q13530 473 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 RUNX3Q13761 415 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 POLD3Q15054 466 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 PDK1Q15118 436 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 PRKD1Q15139 912 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 C6orf118Q5T5N4 469 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 RNF219Q5W0B1 726 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 DARS2Q6PI48 645 aaKnown RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 CCDC137Q6PK04 289 aaKnown RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 BZW1Q7L1Q6 419 aaKnown RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 KIAA0907Q7Z7F0 614 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 C12orf40Q86WS4 652 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 MFN1Q8IWA4 741 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 APCDD1Q8J025 514 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 NAT16Q8N8M0 369 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 TTC8Q8TAM2 541 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 TFB1MQ8WVM0 346 aaKnown RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 ATP2A3Q93084 1043 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 HDAC11Q96DB2 347 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 TSGA13Q96PP4 275 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 FEM1AQ9BSK4 669 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 TMEM121Q9BTD3 319 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 ACE2Q9BYF1 805 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 MAGEH1Q9H213 219 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 GTSE1Q9NYZ3 720 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 AMACRQ9UHK6 382 aa9.62□□□□□ -0.87
TRIM28-208ENST00000597172 INTS6Q9UL03 887 aaKnown RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 APOBEC2Q9Y235 224 aaKnown RBP9.62□□□□□ -0.87
TRIM28-208ENST00000597172 DOCK4Q8N1I0 1966 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 TYW5A2RUC4 315 aaKnown RBP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ARHGAP42A6NI28 874 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ENO4A6NNW6 628 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 MCF2LO15068 1137 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 KDELR3O43731 214 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 CACNG3O60359 315 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ZMPSTE24O75844 475 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 APBB3O95704 486 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 PEX11BO96011 259 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ADH1CP00326 375 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 RHOCP08134 193 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ADH5P11766 374 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 CD59P13987 128 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ETS1P14921 441 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 MX2P20592 715 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 GLDCP23378 1020 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 CCNCP24863 283 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 GJA4P35212 333 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 CSKP41240 450 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 FNTAP49354 379 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 NUMBP49757 651 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 PLK1P53350 603 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 MESP2Q0VG99 397 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 WASHC5Q12768 1159 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 CDH18Q13634 790 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 PARP15Q460N3 678 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 USP39Q53GS9 565 aaKnown RBP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 TAF1BQ53T94 588 aaPredicted RBP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 SLC45A4Q5BKX6 768 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 NAIF1Q69YI7 327 aaPredicted RBP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ZNF783Q6ZMS7 281 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 GPR155Q7Z3F1 870 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 PRUNE1Q86TP1 453 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 LRRC49Q8IUZ0 686 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ETFBKMTQ8IXQ9 262 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ALLCQ8N6M5 410 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 GLIS1Q8NBF1 620 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 CCNYQ8ND76 341 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 CAMK1GQ96NX5 476 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 QKIQ96PU8 341 aaKnown RBP eCLIP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 LRRC1Q9BTT6 524 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 SPON2Q9BUD6 331 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 GTPBP2Q9BX10 602 aaKnown RBP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 SLC2A11Q9BYW1 496 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 BRD8Q9H0E9 1235 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 POLMQ9NP87 494 aaPredicted RBP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 KIAA1522Q9P206 1035 aaPredicted RBP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 EBF1Q9UH73 591 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 IPO11Q9UI26 975 aaKnown RBP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 ZNF148Q9UQR1 794 aa9.61□□□□□ -0.87
TRIM28-208ENST00000597172 SETD2Q9BYW2 2564 aaPredicted RBP9.61□□□□□ -0.87
TRIM28-208ENST00000597172 KIF26AQ9ULI4 1882 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-208ENST00000597172 BHMG1C9JSJ3 638 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-208ENST00000597172 KCNK1O00180 336 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 PPP1R12AO14974 1030 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-208ENST00000597172 MATN3O15232 486 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 TTI1O43156 1089 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 RAD51CO43502 376 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 SLC28A2O43868 658 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 SH3BP5O60239 455 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 SNAP91O60641 907 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 PRAMEF11O60813 436 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 CD160O95971 181 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 ZSCAN5DPP0CG00 497 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 STIP1P31948 543 aaKnown RBP9.6□□□□□ -0.87
TRIM28-208ENST00000597172 OPRD1P41143 372 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 DGKEP52429 567 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 ZNF33AQ06730 810 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 IL10RBQ08334 325 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 AP1B1Q10567 949 aa9.6□□□□□ -0.87
TRIM28-208ENST00000597172 NR1H3Q13133 447 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms