RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CHRNA4P43681 627 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 SLC7A9P82251 487 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 CDK18Q07002 472 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 CCDC15Q0P6D6 951 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 TSTD2Q5T7W7 516 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 ESRP1Q6NXG1 681 aaKnown RBP14.34□□□□□ -0.11
LIG3-205ENST00000585941 ZC3HC1Q86WB0 502 aaKnown RBP14.34□□□□□ -0.11
LIG3-205ENST00000585941 FAM217AQ8IXS0 508 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 SLC25A41Q8N5S1 370 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 PTPRN2Q92932 1015 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 E2F7Q96AV8 911 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 VPS39Q96JC1 886 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 ZNF778Q96MU6 729 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 GPR22Q99680 433 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 TRIM55Q9BYV6 548 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 ATXN3LQ9H3M9 355 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 ANKRD6Q9Y2G4 727 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 RWDD3Q9Y3V2 267 aa14.34□□□□□ -0.11
LIG3-205ENST00000585941 ARIH1Q9Y4X5 557 aaPredicted RBP14.34□□□□□ -0.11
LIG3-205ENST00000585941 MTCL1Q9Y4B5 1905 aaKnown RBP14.34□□□□□ -0.11
LIG3-205ENST00000585941 SLC7A4O43246 635 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 DCTN3O75935 186 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 FGF19O95750 216 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 C1RP00736 705 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 BGNP21810 368 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 C1QTNF8P60827 252 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 CNGA3Q16281 694 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 SIRPB2Q5JXA9 342 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 Q6ZNB5 142 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 KDELC2Q7Z4H8 507 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 UBE2Q1Q7Z7E8 422 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 GALNT7Q86SF2 657 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 ARL14EPQ8N8R7 260 aaPredicted RBP14.33□□□□□ -0.11
LIG3-205ENST00000585941 KREMEN2Q8NCW0 462 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 C7orf26Q96N11 449 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 MUC3BQ9H195 1237 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 SMPD4Q9NXE4 827 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 MID2Q9UJV3 735 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 RIMKLBQ9ULI2 386 aa14.33□□□□□ -0.11
LIG3-205ENST00000585941 TRAV19A0A0A6YYK7 116 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 MROH6A6NGR9 719 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 PLIN3O60664 434 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 FSBPO95073 299 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 NDST3O95803 873 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 GLUD1P00367 558 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 APOA4P06727 396 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 C8AP07357 584 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 ATXN1LP0C7T5 689 aaKnown RBP14.33□□□□□ -0.12
LIG3-205ENST00000585941 COL6A2P12110 1019 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 MSLNQ13421 630 aaPredicted RBP14.33□□□□□ -0.12
LIG3-205ENST00000585941 SETDB1Q15047 1291 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 TMEM240Q5SV17 173 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 N4BP2L1Q5TBK1 243 aaPredicted RBP14.33□□□□□ -0.12
LIG3-205ENST00000585941 RNF219Q5W0B1 726 aaPredicted RBP14.33□□□□□ -0.12
LIG3-205ENST00000585941 TXNDC8Q6A555 127 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 CXorf57Q6NSI4 855 aaKnown RBP14.33□□□□□ -0.12
LIG3-205ENST00000585941 NEPROQ6NW34 567 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 CCDC91Q7Z6B0 441 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 CPXM2Q8N436 756 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 C2CD4AQ8NCU7 369 aaPredicted RBP14.33□□□□□ -0.12
LIG3-205ENST00000585941 BADQ92934 168 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 TMA16Q96EY4 203 aaKnown RBP14.33□□□□□ -0.12
LIG3-205ENST00000585941 TSNARE1Q96NA8 513 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 LRRC3Q9BY71 257 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 TLK1Q9UKI8 766 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 MTO1Q9Y2Z2 717 aaKnown RBP14.33□□□□□ -0.12
LIG3-205ENST00000585941 CPQQ9Y646 472 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 SLC4A7Q9Y6M7 1214 aa14.33□□□□□ -0.12
LIG3-205ENST00000585941 A0A096LPK6 155 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 H0Y626 953 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 GFRA2O00451 464 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 TSPAN3O60637 253 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 TBL1XO60907 577 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 LUC7L3O95232 432 aaKnown RBP14.32□□□□□ -0.12
LIG3-205ENST00000585941 CKMP06732 381 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 SPATA31D3P0C874 917 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 ARNTP27540 789 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 BMPR1AP36894 532 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 MAGEA9P43362 315 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 TMPRSS15P98073 1019 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 UBE3AQ05086 875 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 NSUN2Q08J23 767 aaKnown RBP eCLIP14.32□□□□□ -0.12
LIG3-205ENST00000585941 TAF1BQ53T94 588 aaPredicted RBP14.32□□□□□ -0.12
LIG3-205ENST00000585941 INO80DQ53TQ3 878 aaPredicted RBP14.32□□□□□ -0.12
LIG3-205ENST00000585941 RALGPS1Q5JS13 557 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 MPP7Q5T2T1 576 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 SPATA31D4Q6ZUB0 917 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 HTR3DQ70Z44 454 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 TMC8Q8IU68 726 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 OR52K2Q8NGK3 314 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 ADAMTS19Q8TE59 1207 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 SREK1Q8WXA9 508 aaKnown RBP14.32□□□□□ -0.12
LIG3-205ENST00000585941 HERVK_113Q902F9 699 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 SLC22A12Q96S37 553 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 CYP2S1Q96SQ9 504 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 TCF25Q9BQ70 676 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 MTIF3Q9H2K0 278 aaKnown RBP14.32□□□□□ -0.12
LIG3-205ENST00000585941 ALG13Q9NP73 1137 aaKnown RBP14.32□□□□□ -0.12
LIG3-205ENST00000585941 ASAH2Q9NR71 780 aa14.32□□□□□ -0.12
LIG3-205ENST00000585941 CBX4O00257 560 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms