RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 OXCT1P55809 520 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 GNA12Q03113 381 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 SLC10A7Q0GE19 358 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 SEPT6Q14141 434 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 PABPC1LQ4VXU2 614 aaKnown RBP11.39□□□□□ -0.59
LIG3-204ENST00000585740 TSTD2Q5T7W7 516 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 ALG1LQ6GMV1 187 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 ZNF783Q6ZMS7 281 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 SETD3Q86TU7 594 aaPredicted RBP11.39□□□□□ -0.59
LIG3-204ENST00000585740 ZC3HC1Q86WB0 502 aaKnown RBP11.39□□□□□ -0.59
LIG3-204ENST00000585740 TCEAL8Q8IYN2 117 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 PPP4R1Q8TF05 950 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 ERP27Q96DN0 273 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 IFT43Q96FT9 208 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 ZNF419Q96HQ0 510 aaPredicted RBP11.39□□□□□ -0.59
LIG3-204ENST00000585740 KLHL5Q96PQ7 755 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 RAB3IPQ96QF0 476 aaPredicted RBP11.39□□□□□ -0.59
LIG3-204ENST00000585740 AGAP2Q99490 1192 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 KLF16Q9BXK1 252 aaPredicted RBP11.39□□□□□ -0.59
LIG3-204ENST00000585740 WWP1Q9H0M0 922 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 PDFQ9HBH1 243 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 SLC40A1Q9NP59 571 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 EMCNQ9ULC0 261 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 RIMKLBQ9ULI2 386 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 ASB3Q9Y575 518 aa11.39□□□□□ -0.59
LIG3-204ENST00000585740 OBSL1O75147 1896 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 A0A1B0GVM2 712 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 TYW5A2RUC4 315 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 TCAF2A6NFQ2 919 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 PRRG1O14668 218 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 KIAA0355O15063 1070 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 SLC7A4O43246 635 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 KDELR3O43731 214 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 STC2O76061 302 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 UNC5CO95185 931 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 GJB5O95377 273 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 C2P06681 752 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 RHOCP08134 193 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 MMP2P08253 660 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 DLDP09622 509 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 CPA3P15088 417 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 NQO1P15559 274 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 CORO1AP31146 461 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 ACVRL1P37023 503 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ARCN1P48444 511 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 CD151P48509 253 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 DSC2Q02487 901 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ZBTB16Q05516 673 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ASPHQ12797 758 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ZNF177Q13360 481 aaPredicted RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 SLC12A1Q13621 1099 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 USP10Q14694 798 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 PCSK7Q16549 785 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 TSNAXIP1Q2TAA8 658 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ADGRF1Q5T601 910 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ZNF697Q5TEC3 545 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 FAM91A1Q658Y4 838 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ESRP1Q6NXG1 681 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 C16orf46Q6P387 395 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 CLEC14AQ86T13 490 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 WDR75Q8IWA0 830 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 TMEM199Q8N511 208 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.38□□□□□ -0.59
LIG3-204ENST00000585740 C2CD4AQ8NCU7 369 aaPredicted RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 RFWD2Q8NHY2 731 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ARRDC2Q8TBH0 407 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 INPP5DQ92835 1189 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 KLHL29Q96CT2 875 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 THOC1Q96FV9 657 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 MECRQ9BV79 373 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 CINPQ9BW66 212 aaPredicted RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 TMEM120AQ9BXJ8 343 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 MRPL17Q9NRX2 175 aaKnown RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 IL1RAPL1Q9NZN1 696 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 TMEM216Q9P0N5 145 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 COPG2Q9UBF2 871 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 UBA2Q9UBT2 640 aaPredicted RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 DCTN4Q9UJW0 460 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 PCDHB12Q9Y5F1 795 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 ZFP37Q9Y6Q3 630 aaPredicted RBP11.38□□□□□ -0.59
LIG3-204ENST00000585740 DENND4CQ5VZ89 1909 aa11.38□□□□□ -0.59
LIG3-204ENST00000585740 PRUNE2Q8WUY3 3088 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 A0A087X1B8 175 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 A0A0G2JND7 137 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 CCDC195A0A1B0GUA6 201 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 TMEM114B3SHH9 223 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 CCDC22O60826 627 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 HAUS5O94927 633 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 VAPBO95292 243 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 SERPINF2P08697 491 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 RALBP11234 206 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 FGF3P11487 239 aaPredicted RBP11.37□□□□□ -0.59
LIG3-204ENST00000585740 HOXB8P17481 243 aaPredicted RBP11.37□□□□□ -0.59
LIG3-204ENST00000585740 COL9A1P20849 921 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 SLC6A4P31645 630 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 CSRP3P50461 194 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 CLCN5P51795 746 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 SLC12A2P55011 1212 aa11.37□□□□□ -0.59
LIG3-204ENST00000585740 MAXP61244 160 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms