RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 KIFC1Q9BW19 673 aa10.54□□□□□ -0.72
LIG3-203ENST00000585370 MFSD1Q9H3U5 465 aa10.54□□□□□ -0.72
LIG3-203ENST00000585370 MRM3Q9HC36 420 aaKnown RBP10.54□□□□□ -0.72
LIG3-203ENST00000585370 TRPC7Q9HCX4 862 aa10.54□□□□□ -0.72
LIG3-203ENST00000585370 NSMCE4AQ9NXX6 385 aa10.54□□□□□ -0.72
LIG3-203ENST00000585370 SEPT3Q9UH03 358 aa10.54□□□□□ -0.72
LIG3-203ENST00000585370 SOX13Q9UN79 622 aa10.54□□□□□ -0.72
LIG3-203ENST00000585370 DUSP12Q9UNI6 340 aa10.54□□□□□ -0.72
LIG3-203ENST00000585370 ZFP37Q9Y6Q3 630 aaPredicted RBP10.54□□□□□ -0.72
LIG3-203ENST00000585370 DOCK8Q8NF50 2099 aa10.54□□□□□ -0.72
LIG3-203ENST00000585370 ZNF292O60281 2723 aa10.54□□□□□ -0.72
LIG3-203ENST00000585370 EP300Q09472 2414 aaPredicted RBP10.54□□□□□ -0.72
LIG3-203ENST00000585370 MTCL1Q9Y4B5 1905 aaKnown RBP10.53□□□□□ -0.72
LIG3-203ENST00000585370 TMEM120BA0PK00 339 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 FAM47DPA6NHR8 397 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 J3KR12 359 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 ZWINTO95229 277 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 C1QAP02745 245 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 RHOCP08134 193 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 ADRA1AP35348 466 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 NBL1P41271 181 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 SPARCL1Q14515 664 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 CRYMQ14894 314 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 ANKRD20A4Q4UJ75 823 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 MPPE1Q53F39 396 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 TXNDC8Q6A555 127 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 IL31Q6EBC2 164 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 RFWD3Q6PCD5 774 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 TIFABQ6ZNK6 161 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 GAREM2Q75VX8 874 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 ASCL5Q7RTU5 278 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 TMC8Q8IU68 726 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 MPP5Q8N3R9 675 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 SLC44A3Q8N4M1 653 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 KIAA1958Q8N8K9 716 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 ARL14EPQ8N8R7 260 aaPredicted RBP10.53□□□□□ -0.72
LIG3-203ENST00000585370 ZNF557Q8N988 423 aaPredicted RBP10.53□□□□□ -0.72
LIG3-203ENST00000585370 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIG3-203ENST00000585370 TADA1Q96BN2 335 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 ZFRQ96KR1 1074 aaKnown RBP10.53□□□□□ -0.72
LIG3-203ENST00000585370 MYADMQ96S97 322 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 FSD1LQ9BXM9 530 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 ACE2Q9BYF1 805 aaPredicted RBP10.53□□□□□ -0.72
LIG3-203ENST00000585370 PRKD2Q9BZL6 878 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 POLR1EQ9GZS1 481 aaKnown RBP10.53□□□□□ -0.72
LIG3-203ENST00000585370 ATXN3LQ9H3M9 355 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 NT5MQ9NPB1 228 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 SYBUQ9NX95 663 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 ZDHHC7Q9NXF8 308 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 EPS15L1Q9UBC2 864 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 UBA2Q9UBT2 640 aaPredicted RBP10.53□□□□□ -0.72
LIG3-203ENST00000585370 CTNNAL1Q9UBT7 734 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 SH3BP1Q9Y3L3 701 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 CPQQ9Y646 472 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 RPS6KL1Q9Y6S9 549 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 DOCK4Q8N1I0 1966 aa10.53□□□□□ -0.72
LIG3-203ENST00000585370 DMXL1Q9Y485 3027 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 E2F8A0AVK6 867 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 GFRA2O00451 464 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 ZNF197O14709 1029 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 TM9SF1O15321 606 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 CKMP06732 381 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 IRF1P10914 325 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 MYL4P12829 197 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 PAMP19021 973 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 AOC1P19801 751 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 ADRA1DP25100 572 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 HADHAP40939 763 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 WNT3AP56704 352 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 RPS24P62847 133 aaKnown RBP10.52□□□□□ -0.73
LIG3-203ENST00000585370 IL9RQ01113 521 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 SLC18A2Q05940 514 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 ITKQ08881 620 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 SLC10A7Q0GE19 358 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 ZNF235Q14590 738 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 INO80DQ53TQ3 878 aaPredicted RBP10.52□□□□□ -0.73
LIG3-203ENST00000585370 RALGPS1Q5JS13 557 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 GRTP1Q5TC63 336 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 ALG1LQ6GMV1 187 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 PKN3Q6P5Z2 889 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 KDELC1Q6UW63 502 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 NLRP9Q7RTR0 991 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 METTL3Q86U44 580 aaKnown RBP10.52□□□□□ -0.73
LIG3-203ENST00000585370 PRPF39Q86UA1 669 aaKnown RBP10.52□□□□□ -0.73
LIG3-203ENST00000585370 HS6ST3Q8IZP7 471 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 SIX5Q8N196 739 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 CFAP52Q8N1V2 620 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 MAB21L3Q8N8X9 362 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 PPHLN1Q8NEY8 458 aaKnown RBP10.52□□□□□ -0.73
LIG3-203ENST00000585370 MDM1Q8TC05 714 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 BCAS4Q8TDM0 211 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 ACMSDQ8TDX5 336 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 DYDC1Q8WWB3 177 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 SMG7Q92540 1137 aaKnown RBP10.52□□□□□ -0.73
LIG3-203ENST00000585370 RANBP9Q96S59 729 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 CYP2S1Q96SQ9 504 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 CPNE1Q99829 537 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 CORO1BQ9BR76 489 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 FICDQ9BVA6 458 aa10.52□□□□□ -0.73
LIG3-203ENST00000585370 TASP1Q9H6P5 420 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms