RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	TXNRD3NB	Q6F5E7	133 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	NAPEPLD	Q6IQ20	393 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	SARM1	Q6SZW1	724 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	PARS2	Q7L3T8	475 aa	Known RBP	13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	ZNF354C	Q86Y25	554 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	ARHGAP12	Q8IWW6	846 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	CASKIN2	Q8WXE0	1202 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	CELF6	Q96J87	481 aa	Known RBP	13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	SERAC1	Q96JX3	654 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	SCUBE2	Q9NQ36	999 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	DYRK4	Q9NR20	520 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	CWC15	Q9P013	229 aa	Known RBP	13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	IP6K2	Q9UHH9	426 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	DMTF1	Q9Y222	760 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	FREM2	Q5SZK8	3169 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	COL5A1	P20908	1838 aa	Predicted RBP	13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	TRABD2B	A6NFA1	517 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	ADRB3	P13945	408 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	CD38	P28907	300 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	MAT2A	P31153	395 aa	Known RBP	13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	NUDT1	P36639	197 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	HCAR3	P49019	387 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	CCDC15	Q0P6D6	951 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	SETMAR	Q53H47	684 aa	Predicted RBP	13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	CCDC157	Q569K6	752 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	NEK5	Q6P3R8	708 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	ADAT2	Q7Z6V5	191 aa	Known RBP	13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	PRPF39	Q86UA1	669 aa	Known RBP	13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	ZNF564	Q8TBZ8	553 aa	Predicted RBP	13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	TEKT4	Q8WW24	435 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	COL26A1	Q96A83	441 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	CRELD1	Q96HD1	420 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	GDAP1L1	Q96MZ0	367 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	CDC6	Q99741	560 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	PACSIN1	Q9BY11	444 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	SLC39A8	Q9C0K1	460 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	TOR4A	Q9NXH8	423 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	LHX3	Q9UBR4	397 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	IGSF10	Q6WRI0	2623 aa		13.51	□□□□□ -0.25
SREBF1-223	ENST00000584760	GCN1	Q92616	2671 aa	Known RBP	13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760		A0A1W2PQU0	124 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	FAM149A	A5PLN7	773 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760		H3BRJ5	948 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760		J3KR12	359 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	KRIT1	O00522	736 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	PRAMEF11	O60813	436 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	RNGTT	O60942	597 aa	Known RBP	13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	IGSF6	O95976	241 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	UGT2B4	P06133	528 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	TPM1	P09493	284 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	RARA	P10276	462 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	ADK	P55263	362 aa	Known RBP	13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	TBX2	Q13207	712 aa	Predicted RBP	13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	CYTH1	Q15438	398 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	ZNF284	Q2VY69	593 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	TMEM259	Q4ZIN3	620 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	BOLA3	Q53S33	107 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	ZNF805	Q5CZA5	627 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	DBX2	Q6ZNG2	339 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	POLN	Q7Z5Q5	900 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	HORMAD1	Q86X24	394 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	CPNE8	Q86YQ8	564 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	RYBP	Q8N488	228 aa	Predicted RBP	13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	TMEM145	Q8NBT3	493 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	NETO2	Q8NC67	525 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	BAHD1	Q8TBE0	780 aa	Predicted RBP	13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	TSC1	Q92574	1164 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	HSPH1	Q92598	858 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	EXOC2	Q96KP1	924 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	CSPG4P5	Q96PW8	444 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	CHP1	Q99653	195 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	OSBPL1A	Q9BXW6	950 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	ZWILCH	Q9H900	591 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	AASDHPPT	Q9NRN7	309 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	UVRAG	Q9P2Y5	699 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	UBA2	Q9UBT2	640 aa	Predicted RBP	13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	DKK4	Q9UBT3	224 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	ZFR2	Q9UPR6	939 aa	Known RBP	13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	BTBD3	Q9Y2F9	522 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	MFHAS1	Q9Y4C4	1052 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	PCDHGB2	Q9Y5G2	931 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	FADS3	Q9Y5Q0	445 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	PLXNB3	Q9ULL4	1909 aa		13.5	□□□□□ -0.25
SREBF1-223	ENST00000584760	ARHGAP42	A6NI28	874 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760		H0Y8X5	98 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	MYO1F	O00160	1098 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	FLRT2	O43155	660 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	SPINT1	O43278	529 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	DAPK3	O43293	454 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	AP1G1	O43747	822 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	POP4	O95707	220 aa	Known RBP	13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	PRLR	P16471	622 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	ABL2	P42684	1182 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	CCT8	P50990	548 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	PAPOLA	P51003	745 aa	Known RBP	13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	C21orf59	P57076	290 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	RHOA	P61586	193 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	MYLK3	Q32MK0	819 aa		13.49	□□□□□ -0.25
SREBF1-223	ENST00000584760	SEL1L3	Q68CR1	1132 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms