RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 PGM5Q15124 567 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 EDRF1Q3B7T1 1238 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 EARS2Q5JPH6 523 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 C9orf50Q5SZB4 431 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 SPATA1Q5VX52 437 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 HAUS3Q68CZ6 603 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 NCAPH2Q6IBW4 605 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 NAPEPLDQ6IQ20 393 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 AAGABQ6PD74 315 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 BRINP3Q76B58 766 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 PRSS45Q7RTY3 260 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 CPLX4Q7Z7G2 160 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 TADA2BQ86TJ2 420 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 WDR5BQ86VZ2 330 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 CCDC25Q86WR0 208 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 ADSSL1Q8N142 457 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 NGEFQ8N5V2 710 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 WIPF2Q8TF74 440 aaPredicted RBP3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 TMEM170AQ8WVE7 144 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 IP6K1Q92551 441 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 PIMREGQ9BSJ6 248 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 FRMD8Q9BZ67 464 aaPredicted RBP3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 RANBP17Q9H2T7 1088 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 HIPK3Q9H422 1215 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 PLEKHA5Q9HAU0 1116 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 PEMTQ9UBM1 199 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 NAALADL1Q9UQQ1 740 aa3.97□□□□□ -1.77
SMCHD1-209ENST00000583441 MST1RQ04912 1400 aa3.96□□□□□ -1.77
SMCHD1-209ENST00000583441 C17orf102A2RUQ5 167 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 FOXO6A8MYZ6 492 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 E5RJQ4 531 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 RHODO00212 210 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 RNASEH2AO75792 299 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 BCAR3O75815 825 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 NEURL1O76050 574 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 TMCC1O94876 653 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 IGKV3-20P01619 116 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 IRF1P10914 325 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 ACADMP11310 421 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 POU1F1P28069 291 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 FMO4P31512 558 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 CIITAP33076 1130 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 CDKN2AP42771 156 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 GABRB2P47870 512 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 HARS2P49590 506 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 SETQ01105 290 aaPredicted RBP3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 PMPCAQ10713 525 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 MAMLD1Q13495 774 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 ZNF585BQ52M93 769 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 ITPRIPL1Q6GPH6 555 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 DEF8Q6ZN54 512 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 B4GALNT4Q76KP1 1039 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 FAM160B2Q86V87 743 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 TMC8Q8IU68 726 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 DDIASQ8IXT1 998 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 DPP10Q8N608 796 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 TMEM217Q8N7C4 229 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 ANKRD52Q8NB46 1076 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 NEK9Q8TD19 979 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 DNASE2BQ8WZ79 361 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 MPHOSPH8Q99549 860 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 CHCHD6Q9BRQ6 235 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 TTYH1Q9H313 450 aaPredicted RBP3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 BRF2Q9HAW0 419 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 MLXIPLQ9NP71 852 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 PDGFCQ9NRA1 345 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 NSMCE4AQ9NXX6 385 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 KIAA1456Q9P272 454 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 AGO2Q9UKV8 859 aaKnown RBP3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 LAMP3Q9UQV4 416 aa3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.96□□□□□ -1.78
SMCHD1-209ENST00000583441 KIR2DS5A0A0G2JLQ3 304 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 FSD2A1L4K1 749 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 PABPN1LA6NDY0 278 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 NPIPB15A6NHN6 443 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 C4orf47A7E2U8 309 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 K7ENM7 598 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 KIR2DS3K7RE56 304 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 CRYABP02511 175 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 LAMP2P13473 410 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 ZNF8P17098 575 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 PTPN2P17706 415 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 KLRC2P26717 231 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 SLC16A2P36021 539 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 CPOXP36551 454 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 GPR12P47775 334 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 CPA2P48052 419 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 ID2Q02363 134 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 CYP4A11Q02928 519 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 GOLGA8DPQ0D2H9 430 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 RBMS2Q15434 407 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 TAF11Q15544 211 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 TBCEQ15813 527 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 CCNG2Q16589 344 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 SLC9B1Q4ZJI4 515 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 ZNF667Q5HYK9 610 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 SERTAD4-AS1Q5TG53 156 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 ZNF793Q6ZN11 406 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 FASTKD5Q7L8L6 764 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 KDELC2Q7Z4H8 507 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms