RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GIMD1P0DJR0 217 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 ABL2P42684 1182 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 ZNF165P49910 485 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 SNRPD1P62314 119 aaKnown RBP20.78■□□□□ 0.92
SHMT1-209ENST00000582653 MAMLD1Q13495 774 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 ASIC2Q16515 512 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 MYLK3Q32MK0 819 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 E4F1Q66K89 784 aaPredicted RBP20.78■□□□□ 0.92
SHMT1-209ENST00000582653 TMC6Q7Z403 805 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 SLC22A18ASQ8N1D0 253 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 RAB7BQ96AH8 199 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 HMCESQ96FZ2 354 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 GPR27Q9NS67 375 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 GGT7Q9UJ14 662 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 CLCA2Q9UQC9 943 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 ITM2BQ9Y287 266 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 ZFYVE26Q68DK2 2539 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 CHD5Q8TDI0 1954 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 CACNA1GO43497 2377 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 POM121BA6NF01 834 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 RASA4BC9J798 803 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 RAD51BO15315 384 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 RASA4O43374 803 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 TMCC1O94876 653 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 POP4O95707 220 aaKnown RBP20.77■□□□□ 0.92
SHMT1-209ENST00000582653 GSRP00390 522 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 UGT2B4P06133 528 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 INSM1Q01101 510 aaPredicted RBP20.77■□□□□ 0.92
SHMT1-209ENST00000582653 FILIP1LQ4L180 1135 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 ZNF805Q5CZA5 627 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 ZNF571Q7Z3V5 609 aaPredicted RBP20.77■□□□□ 0.92
SHMT1-209ENST00000582653 ASB12Q8WXK4 309 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 VCPIP1Q96JH7 1222 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 KLHL32Q96NJ5 620 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 EPAS1Q99814 870 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 C1QTNF2Q9BXJ5 285 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 AK5Q9Y6K8 562 aa20.77■□□□□ 0.92
SHMT1-209ENST00000582653 ACACAQ13085 2346 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 IGLON5A6NGN9 336 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 SCAMP1O15126 338 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 PSMA2P25787 234 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 DAB2P98082 770 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 SGCGQ13326 291 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 IQCB1Q15051 598 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 CA9Q16790 459 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 ZNF542PQ5EBM4 170 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 PLEKHA7Q6IQ23 1121 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 ARFGAP1Q8N6T3 406 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 DCBLD1Q8N8Z6 715 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 KLF6Q99612 283 aaPredicted RBP20.76■□□□□ 0.91
SHMT1-209ENST00000582653 FUCA2Q9BTY2 467 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 TRIM7Q9C029 511 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 CATSPERBQ9H7T0 1116 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 PARVAQ9NVD7 372 aa20.76■□□□□ 0.91
SHMT1-209ENST00000582653 APC2O95996 2303 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 SPTY2D1-AS1A0A0U1RR47 76 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 A0A1B0GTH6 734 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 ZSCAN5CA6NGD5 496 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-209ENST00000582653 WASH4PA8MWX3 477 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 SPINT1O43278 529 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 FTLP02792 175 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-209ENST00000582653 CSF2P04141 144 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 ALPPL2P10696 532 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 CKMT1AP12532 417 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 SKILP12757 684 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 RABIFP47224 123 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 AIF1P55008 147 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 YBEYP58557 167 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-209ENST00000582653 HNRNPKP61978 463 aaKnown RBP eCLIP20.75■□□□□ 0.91
SHMT1-209ENST00000582653 SERINC3Q13530 473 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 COL9A2Q14055 689 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-209ENST00000582653 LRRC73Q5JTD7 316 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 GDPD4Q6W3E5 623 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 KYAT3Q6YP21 454 aaKnown RBP20.75■□□□□ 0.91
SHMT1-209ENST00000582653 KDM7AQ6ZMT4 941 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 FAM181AQ8N9Y4 354 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 DUSP23Q9BVJ7 150 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 OSBPL1AQ9BXW6 950 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 TTYH3Q9C0H2 523 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 DNAJC28Q9NX36 388 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 NLGN3Q9NZ94 848 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 AIPL1Q9NZN9 384 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 PCSK1NQ9UHG2 260 aa20.75■□□□□ 0.91
SHMT1-209ENST00000582653 A0A1W2PQC6 194 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 TMEM191CA6NGB0 347 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 DDX3XO00571 662 aaKnown RBP eCLIP20.74■□□□□ 0.91
SHMT1-209ENST00000582653 NEMP1O14524 444 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 FPGTO14772 594 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 INSIG1O15503 277 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 FFAR2O15552 330 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 ITIH2P19823 946 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 EIF2S3P41091 472 aaKnown RBP20.74■□□□□ 0.91
SHMT1-209ENST00000582653 TPI1P60174 286 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 RHOAP61586 193 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 SEMG2Q02383 582 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 FZD2Q14332 565 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 NR1I3Q14994 352 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 CYTH1Q15438 398 aa20.74■□□□□ 0.91
SHMT1-209ENST00000582653 SOWAHCQ53LP3 525 aaPredicted RBP20.74■□□□□ 0.91
SHMT1-209ENST00000582653 INO80DQ53TQ3 878 aaPredicted RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 297.7 ms