RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 DNAI1Q9UI46 699 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 ITM2BQ9Y287 266 aa21.4■■□□□ 1.02
VPS53-216ENST00000574029 GCN1Q92616 2671 aaKnown RBP21.4■■□□□ 1.02
VPS53-216ENST00000574029 NEMP1O14524 444 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 AREL1O15033 823 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 POP4O95707 220 aaKnown RBP21.39■■□□□ 1.01
VPS53-216ENST00000574029 SDC4P31431 198 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 PTPN9P43378 593 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 CDR2Q01850 454 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 CDKN3Q16667 212 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 ISXQ2M1V0 245 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 MYLK3Q32MK0 819 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 GUSBP11Q6P575 273 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 IGF2-ASQ6U949 168 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 PCSK4Q6UW60 755 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 STRADAQ7RTN6 431 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 LMX1AQ8TE12 382 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 BTN2A2Q8WVV5 523 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 CENPTQ96BT3 561 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 ARHGEF26Q96DR7 871 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 MAGEB5Q9BZ81 275 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 ASCL3Q9NQ33 180 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 HPCAL4Q9UM19 191 aa21.39■■□□□ 1.01
VPS53-216ENST00000574029 EME2A4GXA9 379 aaPredicted RBP21.38■■□□□ 1.01
VPS53-216ENST00000574029 C2CD4BA6NLJ0 364 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 KRIT1O00522 736 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 LRIG2O94898 1065 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 UGT2B4P06133 528 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 CHRNB2P17787 502 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 EEF1GP26641 437 aaKnown RBP21.38■■□□□ 1.01
VPS53-216ENST00000574029 FMO1Q01740 532 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 DEFB133Q30KQ1 61 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 TCP11X2Q5H9J9 407 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 EFL1Q7Z2Z2 1120 aaKnown RBP21.38■■□□□ 1.01
VPS53-216ENST00000574029 JOSD2Q8TAC2 188 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 GPT2Q8TD30 523 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 CENPIQ92674 756 aaPredicted RBP21.38■■□□□ 1.01
VPS53-216ENST00000574029 GRAMD1AQ96CP6 724 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 TBC1D31Q96DN5 1066 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 NAF1Q96HR8 494 aaKnown RBP21.38■■□□□ 1.01
VPS53-216ENST00000574029 KLHL32Q96NJ5 620 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 GANQ9H2C0 597 aa21.38■■□□□ 1.01
VPS53-216ENST00000574029 CPED1A4D0V7 1026 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 KDELR3O43731 214 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 RAMP2O60895 175 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 GFPT2O94808 682 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 PLEKP08567 350 aaPredicted RBP21.37■■□□□ 1.01
VPS53-216ENST00000574029 UCNP55089 124 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 HDAC4P56524 1084 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 TMPRSS3P57727 454 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 PTK2BQ14289 1009 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 BROXQ5VW32 411 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 GDPD4Q6W3E5 623 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 PHLDB2Q86SQ0 1253 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 CCDC185Q8N715 623 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 TPCN2Q8NHX9 752 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 TBATAQ96M53 351 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 IL12RB2Q99665 862 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 BOCQ9BWV1 1114 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 SPASTQ9UBP0 616 aa21.37■■□□□ 1.01
VPS53-216ENST00000574029 SETXQ7Z333 2677 aaKnown RBP21.37■■□□□ 1.01
VPS53-216ENST00000574029 A0A1W2PNU3 283 aaPredicted RBP21.36■■□□□ 1.01
VPS53-216ENST00000574029 GCATO75600 419 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 IGFALSP35858 605 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 THOP1P52888 689 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 YPEL5P62699 121 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 PTP4A2Q12974 167 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 NR0B2Q15466 257 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 CT47A1Q5JQC4 288 aaPredicted RBP21.36■■□□□ 1.01
VPS53-216ENST00000574029 LEKR1Q6ZMV7 388 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 RBFAQ8N0V3 343 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 ZNF843Q8N446 348 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 SLC30A5Q8TAD4 765 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 KCNE4Q8WWG9 221 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 NTAN1Q96AB6 310 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 C11orf70Q9BRQ4 267 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 DPH1Q9BZG8 443 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 TCEAL2Q9H3H9 227 aaPredicted RBP21.36■■□□□ 1.01
VPS53-216ENST00000574029 THSD1Q9NS62 852 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 APOBEC3BQ9UH17 382 aaKnown RBP21.36■■□□□ 1.01
VPS53-216ENST00000574029 PNMA8BQ9ULN7 279 aaPredicted RBP21.36■■□□□ 1.01
VPS53-216ENST00000574029 SATB2Q9UPW6 733 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 ENTPD2Q9Y5L3 495 aa21.36■■□□□ 1.01
VPS53-216ENST00000574029 ZSCAN5CA6NGD5 496 aaPredicted RBP21.35■■□□□ 1.01
VPS53-216ENST00000574029 ERVH48-1M5A8F1 160 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 TOR1BO14657 336 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 GJB6O95452 261 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 GSCP56915 257 aaPredicted RBP21.35■■□□□ 1.01
VPS53-216ENST00000574029 JAM2P57087 298 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 C3orf38Q5JPI3 329 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 PERM1Q5SV97 790 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 ATXN7L2Q5T6C5 722 aaPredicted RBP21.35■■□□□ 1.01
VPS53-216ENST00000574029 TRIM72Q6ZMU5 477 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 TTC7BQ86TV6 843 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 PHACTR4Q8IZ21 702 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 FAM172AQ8WUF8 416 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 CASKIN2Q8WXE0 1202 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 ATXN7L3BQ96GX2 97 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 VCPIP1Q96JH7 1222 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 GDAP1L1Q96MZ0 367 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms