RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RAPGEFL1Q9UHV5 662 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 SOX13Q9UN79 622 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 LAMA3Q16787 3333 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 CCDC195A0A1B0GUA6 201 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 LOC285095A0A1B0GVY8 99 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 FAM47DPA6NHR8 397 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 SMIM23A6NLE4 172 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 CFAP99D6REC4 459 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 J3KR12 359 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 TM9SF1O15321 606 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 TIMM44O43615 452 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 FGF1P05230 155 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 HLA-DQB2P05538 268 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 IRF1P10914 325 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 HOXB8P17481 243 aaPredicted RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 MGAT1P26572 445 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 SLC6A4P31645 630 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 HPDP32754 393 aaPredicted RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 BMP8BP34820 402 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 SPRP35270 261 aaPredicted RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 ADRA1AP35348 466 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 GP5P40197 560 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 MAGEA10P43363 369 aaPredicted RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 SLCO1A2P46721 670 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 CCT5P48643 541 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 SERPINH1P50454 418 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 NRLP54845 237 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 CSE1LP55060 971 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 WNT3AP56704 352 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 RPL26P61254 145 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 AP1S1P61966 158 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 IL9RQ01113 521 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 SLC10A7Q0GE19 358 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 CRYMQ14894 314 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 FASTKD3Q14CZ7 662 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 SHHQ15465 462 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 DBN1Q16643 649 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 DUSP6Q16828 381 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 STXBP5Q5T5C0 1151 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 RNF219Q5W0B1 726 aaPredicted RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 RNF43Q68DV7 783 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 PKN3Q6P5Z2 889 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 RFWD3Q6PCD5 774 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 TMEM184AQ6ZMB5 413 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 KIAA0408Q6ZU52 694 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 TRABD2AQ86V40 505 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 SPATS2Q86XZ4 545 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 MFN1Q8IWA4 741 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 CTAGE3PQ8IX95 158 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 TAB3Q8N5C8 712 aaPredicted RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 CCDC33Q8N5R6 958 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 CELF5Q8N6W0 485 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 OR52K1Q8NGK4 314 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 UHMK1Q8TAS1 419 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 DEPDC1BQ8WUY9 529 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 TADA1Q96BN2 335 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 CFAP36Q96G28 342 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 NUDCD1Q96RS6 583 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 CPNE1Q99829 537 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 MGME1Q9BQP7 344 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 MLPHQ9BV36 600 aaPredicted RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 CCDC134Q9H6E4 229 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 PDFQ9HBH1 243 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 NT5MQ9NPB1 228 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 NDFIP2Q9NV92 336 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 THG1LQ9NWX6 298 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 SMPD4Q9NXE4 827 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 EURLQ9NYK6 297 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 HACD3Q9P035 362 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 ZFATQ9P243 1243 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 PRKAG3Q9UGI9 489 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 VPS28Q9UK41 221 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 RPL26L1Q9UNX3 145 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 SLC8A2Q9UPR5 921 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 MRPS23Q9Y3D9 190 aaKnown RBP8.07□□□□□ -1.12
VPS39-213ENST00000570062 TTLL3Q9Y4R7 772 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 HCFC2Q9Y5Z7 792 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 RPS6KL1Q9Y6S9 549 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 VWA8A3KMH1 1905 aa8.07□□□□□ -1.12
VPS39-213ENST00000570062 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 INSIG1O15503 277 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 GREM1O60565 184 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 AVILO75366 819 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 ZIC2O95409 532 aaPredicted RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 CRTAMO95727 393 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 NDST3O95803 873 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 ACVRL1P37023 503 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 NNMTP40261 264 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 IRAK1P51617 712 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 RPS24P62847 133 aaKnown RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 GNGT1P63211 74 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 CYP4F8P98187 520 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 RAD51Q06609 339 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 CDK18Q07002 472 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 THOC5Q13769 683 aaKnown RBP8.06□□□□□ -1.12
VPS39-213ENST00000570062 AGERQ15109 404 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 TMED2Q15363 201 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 SKIDA1Q1XH10 827 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 KBTBD12Q3ZCT8 623 aa8.06□□□□□ -1.12
VPS39-213ENST00000570062 GLIPR1L2Q4G1C9 344 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms