RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OR13H1Q8NG92 308 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 SLC39A8Q9C0K1 460 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 LRRC19Q9H756 370 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 IFNKQ9P0W0 207 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 UBA2Q9UBT2 640 aaPredicted RBP21.03■□□□□ 0.96
CLN3-219ENST00000565778 CAPN11Q9UMQ6 739 aa21.03■□□□□ 0.96
CLN3-219ENST00000565778 LUC7L2Q9Y383 392 aaKnown RBP21.03■□□□□ 0.96
CLN3-219ENST00000565778 ARHGAP42A6NI28 874 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 J3KR12 359 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 SERPING1P05155 500 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 ABL2P42684 1182 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 PAPOLAP51003 745 aaKnown RBP21.02■□□□□ 0.96
CLN3-219ENST00000565778 FGL2Q14314 439 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 ZSCAN23Q3MJ62 389 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 HGSNATQ68CP4 663 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 CCNI2Q6ZMN8 369 aaPredicted RBP21.02■□□□□ 0.96
CLN3-219ENST00000565778 RFX8Q6ZV50 586 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 PSTKQ8IV42 348 aaKnown RBP21.02■□□□□ 0.96
CLN3-219ENST00000565778 FAM174AQ8TBP5 190 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 ARHGEF26Q96DR7 871 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 BMFQ96LC9 184 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 KCTD15Q96SI1 283 aaPredicted RBP21.02■□□□□ 0.96
CLN3-219ENST00000565778 KLHL11Q9NVR0 708 aa21.02■□□□□ 0.96
CLN3-219ENST00000565778 SDC3O75056 442 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 LRCH4O75427 683 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 DKK1O94907 266 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 ERCC2P18074 760 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 ACAP1Q15027 740 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 SKOR2Q2VWA4 1001 aaPredicted RBP21.01■□□□□ 0.95
CLN3-219ENST00000565778 GCNT7Q6ZNI0 430 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 TMPRSS7Q7RTY8 843 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 ZSCAN30Q86W11 494 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 DCP2Q8IU60 420 aaKnown RBP21.01■□□□□ 0.95
CLN3-219ENST00000565778 GALNT15Q8N3T1 639 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 IQCDQ96DY2 449 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 EXOC2Q96KP1 924 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 C1QTNF2Q9BXJ5 285 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 ITM2BQ9Y287 266 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 MFHAS1Q9Y4C4 1052 aa21.01■□□□□ 0.95
CLN3-219ENST00000565778 CEP295Q9C0D2 2601 aa21■□□□□ 0.95
CLN3-219ENST00000565778 POM121BA6NF01 834 aa21■□□□□ 0.95
CLN3-219ENST00000565778 A6NNZ2 444 aa21■□□□□ 0.95
CLN3-219ENST00000565778 INSIG1O15503 277 aa21■□□□□ 0.95
CLN3-219ENST00000565778 PRAMEF11O60813 436 aa21■□□□□ 0.95
CLN3-219ENST00000565778 XPAP23025 273 aaPredicted RBP21■□□□□ 0.95
CLN3-219ENST00000565778 DNAJC3Q13217 504 aa21■□□□□ 0.95
CLN3-219ENST00000565778 DHRS13Q6UX07 377 aa21■□□□□ 0.95
CLN3-219ENST00000565778 CYP4V2Q6ZWL3 525 aaPredicted RBP21■□□□□ 0.95
CLN3-219ENST00000565778 PTAR1Q7Z6K3 402 aaPredicted RBP21■□□□□ 0.95
CLN3-219ENST00000565778 ABI3BPQ7Z7G0 1075 aa21■□□□□ 0.95
CLN3-219ENST00000565778 ZCCHC14Q8WYQ9 949 aaKnown RBP21■□□□□ 0.95
CLN3-219ENST00000565778 VOPP1Q96AW1 172 aa21■□□□□ 0.95
CLN3-219ENST00000565778 CPEB1Q9BZB8 566 aaKnown RBP21■□□□□ 0.95
CLN3-219ENST00000565778 LHX3Q9UBR4 397 aa21■□□□□ 0.95
CLN3-219ENST00000565778 IPO11Q9UI26 975 aaKnown RBP21■□□□□ 0.95
CLN3-219ENST00000565778 GGT7Q9UJ14 662 aa21■□□□□ 0.95
CLN3-219ENST00000565778 EPG5Q9HCE0 2579 aa21■□□□□ 0.95
CLN3-219ENST00000565778 DOCK9Q9BZ29 2069 aa21■□□□□ 0.95
CLN3-219ENST00000565778 FRYQ5TBA9 3013 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 MAP1BP46821 2468 aaKnown RBP20.99■□□□□ 0.95
CLN3-219ENST00000565778 DFFAO00273 331 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 FPGTO14772 594 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 RAD51BO15315 384 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 PALMO75781 387 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 TIMP2P16035 220 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 PCK1P35558 622 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 HCAR3P49019 387 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 ZNF135P52742 658 aaPredicted RBP20.99■□□□□ 0.95
CLN3-219ENST00000565778 PIGHQ14442 188 aaPredicted RBP20.99■□□□□ 0.95
CLN3-219ENST00000565778 BOLA3Q53S33 107 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 LRRC73Q5JTD7 316 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 KANSL1Q7Z3B3 1105 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 LENG8Q96PV6 779 aaPredicted RBP20.99■□□□□ 0.95
CLN3-219ENST00000565778 THAP2Q9H0W7 228 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 ZWILCHQ9H900 591 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 CWC15Q9P013 229 aaKnown RBP20.99■□□□□ 0.95
CLN3-219ENST00000565778 DKK3Q9UBP4 350 aa20.99■□□□□ 0.95
CLN3-219ENST00000565778 CHD5Q8TDI0 1954 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 A0A087X0T9 212 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 AREL1O15033 823 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 MMP20O60882 483 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 TPM3P06753 285 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 FAM228BP0C875 321 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 ITIH2P19823 946 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 DGKAP23743 735 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 GRM3Q14832 879 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 HS1BP3Q53T59 392 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 ZNF542PQ5EBM4 170 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 CCDC122Q5T0U0 273 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 MARCH9Q86YJ5 346 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 SLC25A45Q8N413 288 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 CXorf40AQ8TE69 158 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 ASB12Q8WXK4 309 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 HSPH1Q92598 858 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 SUV39H2Q9H5I1 410 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 PDFQ9HBH1 243 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 DNAJC28Q9NX36 388 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 PCDHGA1Q9Y5H4 931 aa20.98■□□□□ 0.95
CLN3-219ENST00000565778 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.98■□□□□ 0.95
CLN3-219ENST00000565778 H3BRJ5 948 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms