RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 FPGTO14772 594 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 BRINP1O60477 761 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 CALB1P05937 261 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 TPM2P07951 284 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 PFN3P60673 137 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 TPRG1LQ5T0D9 272 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 PARGQ86W56 976 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 RYBPQ8N488 228 aaPredicted RBP17.38■□□□□ 0.37
CLN3-216ENST00000565316 C3orf20Q8ND61 904 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 KLF15Q9UIH9 416 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 GGT7Q9UJ14 662 aa17.38■□□□□ 0.37
CLN3-216ENST00000565316 TCRBV5S1A1TA0A578 114 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 LRRC10BA6NIK2 292 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 KRIT1O00522 736 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 RIOK3O14730 519 aaKnown RBP17.37■□□□□ 0.37
CLN3-216ENST00000565316 RRP8O43159 456 aaKnown RBP17.37■□□□□ 0.37
CLN3-216ENST00000565316 LZTS3O60299 673 aaPredicted RBP17.37■□□□□ 0.37
CLN3-216ENST00000565316 UGT2B4P06133 528 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 GPD1P21695 349 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 DUSP3P51452 185 aaPredicted RBP17.37■□□□□ 0.37
CLN3-216ENST00000565316 COPB1P53618 953 aaKnown RBP17.37■□□□□ 0.37
CLN3-216ENST00000565316 SYCP1Q15431 976 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 TBC1D25Q3MII6 688 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 KDM7AQ6ZMT4 941 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 LEKR1Q6ZMV7 388 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 LRRC69Q6ZNQ3 347 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 MON1BQ7L1V2 547 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 SLFN11Q7Z7L1 901 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 RTL3Q8N8U3 475 aaKnown RBP17.37■□□□□ 0.37
CLN3-216ENST00000565316 CASKIN2Q8WXE0 1202 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 BAP1Q92560 729 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 CENPTQ96BT3 561 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 ARHGEF26Q96DR7 871 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 KLHL32Q96NJ5 620 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 PRORYQ9H606 182 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 LIMA1Q9UHB6 759 aaKnown RBP17.37■□□□□ 0.37
CLN3-216ENST00000565316 ITM2BQ9Y287 266 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 MFHAS1Q9Y4C4 1052 aa17.37■□□□□ 0.37
CLN3-216ENST00000565316 HELZ2Q9BYK8 2649 aaKnown RBP17.37■□□□□ 0.37
CLN3-216ENST00000565316 LGALS16A8MUM7 142 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 H3BM21 787 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 NEMP1O14524 444 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 BUB1O43683 1085 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 NEBLO76041 1014 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 TMCC1O94876 653 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 MYF5P13349 255 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 ACTN2P35609 894 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 ZNF143P52747 638 aaPredicted RBP17.36■□□□□ 0.37
CLN3-216ENST00000565316 C1QBPQ07021 282 aaKnown RBP17.36■□□□□ 0.37
CLN3-216ENST00000565316 EIF2B5Q13144 721 aaKnown RBP17.36■□□□□ 0.37
CLN3-216ENST00000565316 PDE1CQ14123 709 aaPredicted RBP17.36■□□□□ 0.37
CLN3-216ENST00000565316 INO80DQ53TQ3 878 aaPredicted RBP17.36■□□□□ 0.37
CLN3-216ENST00000565316 ATXN7L2Q5T6C5 722 aaPredicted RBP17.36■□□□□ 0.37
CLN3-216ENST00000565316 ZCCHC8Q6NZY4 707 aaKnown RBP17.36■□□□□ 0.37
CLN3-216ENST00000565316 GDPD4Q6W3E5 623 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 PYROXD2Q8N2H3 581 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 GDAP1L1Q96MZ0 367 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 SELENOOQ9BVL4 669 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 TTYH3Q9C0H2 523 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 EVA1BQ9NVM1 165 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 NCKIPSDQ9NZQ3 722 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 DKK3Q9UBP4 350 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 IPO11Q9UI26 975 aaKnown RBP17.36■□□□□ 0.37
CLN3-216ENST00000565316 PCDHB1Q9Y5F3 818 aa17.36■□□□□ 0.37
CLN3-216ENST00000565316 TDRD6O60522 2096 aaKnown RBP17.35■□□□□ 0.37
CLN3-216ENST00000565316 WASH4PA8MWX3 477 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 TPP1O14773 563 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 AQP9O43315 295 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 YBEYP58557 167 aaPredicted RBP17.35■□□□□ 0.37
CLN3-216ENST00000565316 PPP1R15BQ5SWA1 713 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 NEK11Q8NG66 645 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 DEPDC7Q96QD5 511 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 ERGIC2Q96RQ1 377 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 UBL7Q96S82 380 aaPredicted RBP17.35■□□□□ 0.37
CLN3-216ENST00000565316 KLC2Q9H0B6 622 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 SALL4Q9UJQ4 1053 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 RAI2Q9Y5P3 530 aa17.35■□□□□ 0.37
CLN3-216ENST00000565316 CCP110O43303 1012 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 DXOO77932 396 aaKnown RBP17.34■□□□□ 0.37
CLN3-216ENST00000565316 TIMP2P16035 220 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 JUNDP17535 347 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 EPHB2P29323 1055 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 AIF1P55008 147 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 YPEL5P62699 121 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 RAD51Q06609 339 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 SERINC3Q13530 473 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 PARP15Q460N3 678 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 EFHC2Q5JST6 749 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 APTXQ7Z2E3 356 aaKnown RBP17.34■□□□□ 0.37
CLN3-216ENST00000565316 TTC7BQ86TV6 843 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 UMODL1-AS1Q8N2C9 162 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 IFI44Q8TCB0 444 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 BTN2A2Q8WVV5 523 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 TBATAQ96M53 351 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 AGPAT1Q99943 283 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 CNPY3Q9BT09 278 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 CPEB1Q9BZB8 566 aaKnown RBP17.34■□□□□ 0.37
CLN3-216ENST00000565316 FZD10Q9ULW2 581 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 MGAQ8IWI9 3026 aa17.34■□□□□ 0.37
CLN3-216ENST00000565316 RASA4BC9J798 803 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms