RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 TMEM159Q96B96 161 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 TBATAQ96M53 351 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 PSMB7Q99436 277 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 SPON2Q9BUD6 331 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 THAP9Q9H5L6 903 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 ZDHHC6Q9H6R6 413 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 ZNF71Q9NQZ8 489 aaPredicted RBP7.45□□□□□ -1.22
VPS4A-203ENST00000564399 AKAP7Q9P0M2 348 aaPredicted RBP7.45□□□□□ -1.22
VPS4A-203ENST00000564399 PNMA8BQ9ULN7 279 aaPredicted RBP7.45□□□□□ -1.22
VPS4A-203ENST00000564399 HS3ST4Q9Y661 456 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 C2CD3Q4AC94 2353 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 ANKRD17O75179 2603 aaKnown RBP7.44□□□□□ -1.22
VPS4A-203ENST00000564399 A0A0D9SEW6 157 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 C16orf96A6NNT2 1141 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 C9orf172C9J069 976 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 STMND1H3BQB6 276 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 PAGE1O75459 146 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 GRAP2O75791 330 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 IGFALSP35858 605 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 ABL2P42684 1182 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 RPL34P49207 117 aaKnown RBP7.44□□□□□ -1.22
VPS4A-203ENST00000564399 CCNHP51946 323 aaPredicted RBP7.44□□□□□ -1.22
VPS4A-203ENST00000564399 YPEL5P62699 121 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 MTA1Q13330 715 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 ALFQ53S48 1182 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 CARD16Q5EG05 197 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 RETSATQ6NUM9 610 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 DENND1BQ6P3S1 775 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 LVRNQ6Q4G3 990 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 MACC1Q6ZN28 852 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 RRAGAQ7L523 313 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 TFAP2DQ7Z6R9 452 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 SETD3Q86TU7 594 aaPredicted RBP7.44□□□□□ -1.22
VPS4A-203ENST00000564399 GKN2Q86XP6 184 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 DTX1Q86Y01 620 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 SMYD4Q8IYR2 804 aaPredicted RBP7.44□□□□□ -1.22
VPS4A-203ENST00000564399 IL22RA1Q8N6P7 574 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 PCDH20Q8N6Y1 951 aaKnown RBP7.44□□□□□ -1.22
VPS4A-203ENST00000564399 OR7D4Q8NG98 312 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 C9orf43Q8TAL5 461 aaPredicted RBP7.44□□□□□ -1.22
VPS4A-203ENST00000564399 STK32AQ8WU08 396 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 ASB12Q8WXK4 309 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 TSACCQ96A04 125 aaPredicted RBP7.44□□□□□ -1.22
VPS4A-203ENST00000564399 RAB7BQ96AH8 199 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 CENPTQ96BT3 561 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 ARHGEF26Q96DR7 871 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 TSG101Q99816 390 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 C1QTNF7Q9BXJ2 289 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 SLC12A9Q9BXP2 914 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 SLC4A5Q9BY07 1137 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 EDEM3Q9BZQ6 932 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 KCNK4Q9NYG8 393 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 ARMCX3Q9UH62 379 aaPredicted RBP7.44□□□□□ -1.22
VPS4A-203ENST00000564399 GGT7Q9UJ14 662 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 TUBD1Q9UJT1 453 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 CFAP45Q9UL16 551 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 PLAAQ9Y263 795 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 ITM2BQ9Y287 266 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 RNF215Q9Y6U7 377 aa7.44□□□□□ -1.22
VPS4A-203ENST00000564399 SLC16A3O15427 465 aaKnown RBP7.43□□□□□ -1.22
VPS4A-203ENST00000564399 MED7O43513 233 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 MMP20O60882 483 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 TM7SF2O76062 418 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 LETM1O95202 739 aaPredicted RBP7.43□□□□□ -1.22
VPS4A-203ENST00000564399 RASGRP1O95267 797 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 KRT5P13647 590 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 CMA1P23946 247 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 HTR1BP28222 390 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 OR1E1P30953 314 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 GKP32189 559 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 SYKP43405 635 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 FMO5P49326 533 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 SERPINH1P50454 418 aaKnown RBP7.43□□□□□ -1.22
VPS4A-203ENST00000564399 HK3P52790 923 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 ZFP36L1Q07352 338 aaKnown RBP7.43□□□□□ -1.22
VPS4A-203ENST00000564399 SLC20A2Q08357 652 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 CETN1Q12798 172 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 DPYDQ12882 1025 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 EIF4EBP2Q13542 120 aaPredicted RBP7.43□□□□□ -1.22
VPS4A-203ENST00000564399 ARHGEF7Q14155 803 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 C5orf22Q49AR2 442 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 MAP9Q49MG5 647 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 EFHC1Q5JVL4 640 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 ERICH6BQ5W0A0 696 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 ENPP7Q6UWV6 458 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 LRRC31Q6UY01 552 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 TMEM110Q86TL2 294 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 ATCAYQ86WG3 371 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 OR6K2Q8NGY2 324 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 CXorf40AQ8TE69 158 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 SLC35C1Q96A29 364 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 TM6SF2Q9BZW4 377 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 CEP44Q9C0F1 390 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 METTL14Q9HCE5 456 aaKnown RBP7.43□□□□□ -1.22
VPS4A-203ENST00000564399 ATP13A1Q9HD20 1204 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 MPP6Q9NZW5 540 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 HECAQ9UBI9 543 aaPredicted RBP7.43□□□□□ -1.22
VPS4A-203ENST00000564399 PLEKHB1Q9UF11 243 aaPredicted RBP7.43□□□□□ -1.22
VPS4A-203ENST00000564399 RCOR1Q9UKL0 485 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 FCF1Q9Y324 198 aaKnown RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms