RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 NME1P15531 152 aaKnown RBP15.98■□□□□ 0.15
CLK3-211ENST00000563297 GPD1P21695 349 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 NSFP46459 744 aaKnown RBP15.98■□□□□ 0.15
CLK3-211ENST00000563297 COPB1P53618 953 aaKnown RBP15.98■□□□□ 0.15
CLK3-211ENST00000563297 SYCP1Q15431 976 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 CLEC16AQ2KHT3 1053 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 TPRG1LQ5T0D9 272 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 ATXN7L2Q5T6C5 722 aaPredicted RBP15.98■□□□□ 0.15
CLK3-211ENST00000563297 LRRC69Q6ZNQ3 347 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 SLFN11Q7Z7L1 901 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 PHF13Q86YI8 300 aaPredicted RBP15.98■□□□□ 0.15
CLK3-211ENST00000563297 PYROXD2Q8N2H3 581 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 SNIP1Q8TAD8 396 aaKnown RBP15.98■□□□□ 0.15
CLK3-211ENST00000563297 DUSP23Q9BVJ7 150 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 SELENOOQ9BVL4 669 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 IPO11Q9UI26 975 aaKnown RBP15.98■□□□□ 0.15
CLK3-211ENST00000563297 ITM2BQ9Y287 266 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 PCDHB1Q9Y5F3 818 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 RAI2Q9Y5P3 530 aa15.98■□□□□ 0.15
CLK3-211ENST00000563297 TCRBV5S1A1TA0A578 114 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 ZSCAN5CA6NGD5 496 aaPredicted RBP15.97■□□□□ 0.15
CLK3-211ENST00000563297 AREL1O15033 823 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 RRP8O43159 456 aaKnown RBP15.97■□□□□ 0.15
CLK3-211ENST00000563297 BUB1O43683 1085 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 GP1BAP07359 652 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 DUSP3P51452 185 aaPredicted RBP15.97■□□□□ 0.15
CLK3-211ENST00000563297 PFN3P60673 137 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 EIF2B5Q13144 721 aaKnown RBP15.97■□□□□ 0.15
CLK3-211ENST00000563297 PDE1CQ14123 709 aaPredicted RBP15.97■□□□□ 0.15
CLK3-211ENST00000563297 GDPD4Q6W3E5 623 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 RBM43Q6ZSC3 357 aaKnown RBP15.97■□□□□ 0.15
CLK3-211ENST00000563297 TTC7BQ86TV6 843 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 PARGQ86W56 976 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 NETO2Q8NC67 525 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 C3orf20Q8ND61 904 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 ZNF548Q8NEK5 533 aaPredicted RBP15.97■□□□□ 0.15
CLK3-211ENST00000563297 CENPTQ96BT3 561 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 OSBPL1AQ9BXW6 950 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 TTYH3Q9C0H2 523 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 KLC2Q9H0B6 622 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 PRORYQ9H606 182 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 USP29Q9HBJ7 922 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 LIMA1Q9UHB6 759 aaKnown RBP15.97■□□□□ 0.15
CLK3-211ENST00000563297 CSNK1G3Q9Y6M4 447 aa15.97■□□□□ 0.15
CLK3-211ENST00000563297 LRRC10BA6NIK2 292 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 TMCC1O94876 653 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 CALB1P05937 261 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 JUNDP17535 347 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 ITIH2P19823 946 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 EPHB2P29323 1055 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 ACTN2P35609 894 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 INO80DQ53TQ3 878 aaPredicted RBP15.96■□□□□ 0.15
CLK3-211ENST00000563297 SCYL2Q6P3W7 929 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 MON1BQ7L1V2 547 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 RTL3Q8N8U3 475 aaKnown RBP15.96■□□□□ 0.15
CLK3-211ENST00000563297 DENND6BQ8NEG7 585 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 NEK11Q8NG66 645 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 BAP1Q92560 729 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 ARHGEF26Q96DR7 871 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 PCMTD1Q96MG8 357 aaPredicted RBP15.96■□□□□ 0.15
CLK3-211ENST00000563297 MFHAS1Q9Y4C4 1052 aa15.96■□□□□ 0.15
CLK3-211ENST00000563297 H3BM21 787 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 CCP110O43303 1012 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 AQP9O43315 295 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 MMP20O60882 483 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 TIMP2P16035 220 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 ZNF143P52747 638 aaPredicted RBP15.95■□□□□ 0.14
CLK3-211ENST00000563297 YBEYP58557 167 aaPredicted RBP15.95■□□□□ 0.14
CLK3-211ENST00000563297 RPL7AP62424 266 aaKnown RBP15.95■□□□□ 0.14
CLK3-211ENST00000563297 UBXN1Q04323 297 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 RAD51Q06609 339 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 TBC1D25Q3MII6 688 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 LRRC73Q5JTD7 316 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 ZCCHC8Q6NZY4 707 aaKnown RBP15.95■□□□□ 0.14
CLK3-211ENST00000563297 ZNF354CQ86Y25 554 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 IFI44Q8TCB0 444 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 LMX1AQ8TE12 382 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 CASKIN2Q8WXE0 1202 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 AGPAT1Q99943 283 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 ABCG4Q9H172 646 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 EVA1BQ9NVM1 165 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 SALL4Q9UJQ4 1053 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 FZD10Q9ULW2 581 aa15.95■□□□□ 0.14
CLK3-211ENST00000563297 LGALS16A8MUM7 142 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 WASH4PA8MWX3 477 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 RASA4BC9J798 803 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 TPP1O14773 563 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 RASA4O43374 803 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 CREB3O43889 395 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 TM7SF2O76062 418 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 IGFALSP35858 605 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 C1QBPQ07021 282 aaKnown RBP15.94■□□□□ 0.14
CLK3-211ENST00000563297 SERINC3Q13530 473 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 CYTH1Q15438 398 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 CDKN3Q16667 212 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 DEFB133Q30KQ1 61 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 EFHC2Q5JST6 749 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 PPP1R15BQ5SWA1 713 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 BTN2A2Q8WVV5 523 aa15.94■□□□□ 0.14
CLK3-211ENST00000563297 HMCESQ96FZ2 354 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms