RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 AGAP9Q5VTM2 703 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 FAM45BPQ6NSW5 357 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 AFTPHQ6ULP2 937 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 KDELC1Q6UW63 502 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 C6orf89Q6UWU4 347 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 RSPO2Q6UXX9 243 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 CERS6Q6ZMG9 384 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 TFAP2DQ7Z6R9 452 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 TBC1D1Q86TI0 1168 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 TMEM173Q86WV6 379 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 NUDCD3Q8IVD9 361 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 IGDCC3Q8IVU1 814 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 PLPP6Q8IY26 295 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 RAVER1Q8IY67 606 aaKnown RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 LRRC34Q8IZ02 419 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 ARHGAP24Q8N264 748 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 TAB3Q8N5C8 712 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 TTC9BQ8N6N2 239 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 CCDC63Q8NA47 563 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 GPR150Q8NGU9 434 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 FAM45AQ8TCE6 357 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 BCL7CQ8WUZ0 217 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 ZNF75CPQ92670 426 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 E2F7Q96AV8 911 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 ISG20Q96AZ6 181 aaKnown RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 TMA16Q96EY4 203 aaKnown RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 OXNAD1Q96HP4 312 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 MRGPRX2Q96LB1 330 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 ASB2Q96Q27 587 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 RAB3IPQ96QF0 476 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 TUBGCP5Q96RT8 1024 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 CDCA3Q99618 268 aaPredicted RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 SLC2A11Q9BYW1 496 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 CEP44Q9C0F1 390 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 MUC3BQ9H195 1237 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 PDFQ9HBH1 243 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 NT5MQ9NPB1 228 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 SCUBE2Q9NQ36 999 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 PFDN4Q9NQP4 134 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 SAR1AQ9NR31 198 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 TMPRSS4Q9NRS4 437 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 RAD18Q9NS91 495 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 TREX1Q9NSU2 369 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 FGFR1OP2Q9NVK5 253 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 KCNK4Q9NYG8 393 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 MPP6Q9NZW5 540 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 SIRPGQ9P1W8 387 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 AGO1Q9UL18 857 aaKnown RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 MFHAS1Q9Y4C4 1052 aa7.6□□□□□ -1.19
VPS39-204ENST00000561818 ZNF638Q14966 1978 aaKnown RBP7.6□□□□□ -1.19
VPS39-204ENST00000561818 DOCK4Q8N1I0 1966 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 TRIM43BA6NCK2 446 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 MROH6A6NGR9 719 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 H3BMM5 538 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 PMPCBO75439 489 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 BANF1O75531 89 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 CXCL14O95715 111 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 PEX11BO96011 259 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 PYGLP06737 847 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 BPGMP07738 259 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 RBP1P09455 135 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 CHRM1P11229 460 aaPredicted RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 PTPN2P17706 415 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 CD9P21926 228 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 PSMA3P25788 255 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 CTNNB1P35222 781 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 LEPRP48357 1165 aaKnown RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 TTPAP49638 278 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 PLK1P53350 603 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 ADARP55265 1226 aaKnown RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 WDR4P57081 412 aaKnown RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 RAB10P61026 200 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 DEFB103AP81534 67 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 TMPRSS15P98073 1019 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 GAD2Q05329 585 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 IFT88Q13099 833 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 EFTUD2Q15029 972 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS39-204ENST00000561818 LRRC14Q15048 493 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 TAF1AQ15573 450 aaPredicted RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 ALFQ53S48 1182 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 MROH9Q5TGP6 573 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 SDHAF4Q5VUM1 108 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 FAM91A1Q658Y4 838 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 TTC19Q6DKK2 380 aaPredicted RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 UGT3A1Q6NUS8 523 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 NEPROQ6NW34 567 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 LILRA6Q6PI73 481 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 Q6ZNB5 142 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 SH2D5Q6ZV89 423 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 RAPH1Q70E73 1250 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 TAS1R1Q7RTX1 841 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 ZC3HC1Q86WB0 502 aaKnown RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 DENND1CQ8IV53 801 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 SLC22A9Q8IVM8 553 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 MRPL43Q8N983 215 aaKnown RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 C2CD4AQ8NCU7 369 aaPredicted RBP7.59□□□□□ -1.19
VPS39-204ENST00000561818 KREMEN2Q8NCW0 462 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 TET1Q8NFU7 2136 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 GDAP1Q8TB36 358 aa7.59□□□□□ -1.19
VPS39-204ENST00000561818 PDCD6IPQ8WUM4 868 aaKnown RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms