RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 VAV1P15498 845 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 C5AR1P21730 350 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 XPAP23025 273 aaPredicted RBP9.35□□□□□ -0.91
LDLR-210ENST00000559340 SERPINA4P29622 427 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 AVPR2P30518 371 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 HOXA6P31267 233 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 FDFT1P37268 417 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 SUOXP51687 545 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 CCNHP51946 323 aaPredicted RBP9.35□□□□□ -0.91
LDLR-210ENST00000559340 GEMP55040 296 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 WASHC5Q12768 1159 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 MTAPQ13126 283 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 DHX34Q14147 1143 aaKnown RBP9.35□□□□□ -0.91
LDLR-210ENST00000559340 PARP6Q2NL67 630 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 ANKRD20A2Q5SQ80 823 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 ANKRD20A1Q5TYW2 823 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 ANKRD20A3Q5VUR7 823 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 ALG1LQ6GMV1 187 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 GDPD4Q6W3E5 623 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 DPY19L3Q6ZPD9 716 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 Q6ZS52 159 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 MAATS1Q7Z4T9 603 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 KBTBD6Q86V97 674 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 TMPRSS6Q8IU80 811 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 ZNF567Q8N184 647 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 FAM71DQ8N9W8 422 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 DTWD2Q8NBA8 298 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 TSEN2Q8NCE0 465 aaKnown RBP9.35□□□□□ -0.91
LDLR-210ENST00000559340 OR2A12Q8NGT7 310 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 ATG4AQ8WYN0 398 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 RTP4Q96DX8 246 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 SIPA1Q96FS4 1042 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 AGAP3Q96P47 875 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 FCRL5Q96RD9 977 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 FAM118BQ9BPY3 351 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 TMEM121Q9BTD3 319 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 FAM126AQ9BYI3 521 aaPredicted RBP9.35□□□□□ -0.91
LDLR-210ENST00000559340 RSPH9Q9H1X1 276 aaPredicted RBP9.35□□□□□ -0.91
LDLR-210ENST00000559340 TNKS2Q9H2K2 1166 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 ZDHHC6Q9H6R6 413 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 VPS45Q9NRW7 570 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 DLGAP2Q9P1A6 1054 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 RSPH14Q9UHP6 348 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 EVLQ9UI08 416 aaPredicted RBP9.35□□□□□ -0.91
LDLR-210ENST00000559340 AAR2Q9Y312 384 aaKnown RBP9.35□□□□□ -0.91
LDLR-210ENST00000559340 THADAQ6YHU6 1953 aa9.35□□□□□ -0.91
LDLR-210ENST00000559340 NUMA1Q14980 2115 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 GON4LQ3T8J9 2241 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 CCDC163A0A0D9SF12 145 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 A0A1W2PQF6 199 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 CTAGE15A4D2H0 777 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ERI2A8K979 691 aaKnown RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 PI15O43692 258 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 SOCS5O75159 536 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ZNF821O75541 412 aaPredicted RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 ECEL1O95672 775 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 KRT14P02533 472 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 HLA-DQB2P05538 268 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 CTAGE8P0CG41 777 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 CHRM1P11229 460 aaPredicted RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 CR2P20023 1033 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 OXTRP30559 389 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 SLC8A1P32418 973 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 LMAN1P49257 510 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 RPL26P61254 145 aaKnown RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 TUBB4BP68371 445 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 SATB1Q01826 763 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 TCF15Q12870 199 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ZBTB17Q13105 803 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 MPP3Q13368 585 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 GAS6Q14393 721 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 PPP1R7Q15435 360 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ZNF805Q5CZA5 627 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ARSIQ5FYB1 569 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ATXN7L2Q5T6C5 722 aaPredicted RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 NCEH1Q6PIU2 408 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 BRAT1Q6PJG6 821 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 KIAA1324Q6UXG2 1013 aaKnown RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 TMEM92Q6UXU6 159 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ZNF572Q7Z3I7 529 aaPredicted RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 CTAGE6Q86UF2 777 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 MMAAQ8IVH4 418 aaKnown RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 C1orf210Q8IVY1 113 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 CTAGE4Q8IX94 777 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ZNF366Q8N895 744 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 SPATA4Q8NEY3 305 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 PIP4K2CQ8TBX8 421 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 GANCQ8TET4 914 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 RAB7BQ96AH8 199 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 SRPK1Q96SB4 655 aaKnown RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 FAM129BQ96TA1 746 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 GBA3Q9H227 469 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 SUV39H2Q9H5I1 410 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ZDHHC4Q9NPG8 344 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 DKK3Q9UBP4 350 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 EBF1Q9UH73 591 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 PCYOX1Q9UHG3 505 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 FAM153AQ9UHL3 310 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 FBXO4Q9UKT5 387 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 PPM1HQ9ULR3 514 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms