RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	OR4N2	Q8NGD1	307 aa		4.67	□□□□□ -1.66
VPS13C-208	ENST00000559119	STT3B	Q8TCJ2	826 aa		4.67	□□□□□ -1.66
VPS13C-208	ENST00000559119	MMTAG2	Q9BU76	263 aa	Known RBP	4.67	□□□□□ -1.66
VPS13C-208	ENST00000559119	OR6C3	Q9NZP0	311 aa		4.67	□□□□□ -1.66
VPS13C-208	ENST00000559119	LOC105371045	A0A1W2PR82	267 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	C17orf100	A8MU93	164 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	SYT5	O00445	386 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	SEPT4	O43236	478 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	CAND2	O75155	1236 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	PMS2P2	O95744	297 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	CRYAA	P02489	173 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	KRT18	P05783	430 aa	Known RBP	4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	NLRP5	P59047	1200 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	BYSL	Q13895	437 aa	Known RBP	4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	IL13RA2	Q14627	380 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	AP5B1	Q2VPB7	878 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	HIST2H2BC	Q6DN03	193 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	MB21D2	Q8IYB1	491 aa	Predicted RBP	4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	IL17RC	Q8NAC3	791 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	NCSTN	Q92542	709 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	LRFN5	Q96NI6	719 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	LRFN1	Q9P244	771 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	NLK	Q9UBE8	527 aa		4.66	□□□□□ -1.66
VPS13C-208	ENST00000559119	HBP1	O60381	514 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	GAGE7	O76087	117 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	METTL18	O95568	372 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	PAK4	O96013	591 aa	Predicted RBP	4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	GAGE12F	P0CL80	117 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	GAGE12G	P0CL81	117 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	GAGE12I	P0CL82	117 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	GJC1	P36383	396 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	PNPLA4	P41247	253 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	PNLIPRP1	P54315	467 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	ARHGAP8	P85298	464 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	GAGE1	Q13065	139 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	GAGE4	Q13068	117 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	ACCSL	Q4AC99	568 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	SETMAR	Q53H47	684 aa	Predicted RBP	4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	KRTAP5-1	Q6L8H4	278 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	CCDC105	Q8IYK2	499 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	ATG16L2	Q8NAA4	619 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	MCPH1	Q8NEM0	835 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	LRRC8C	Q8TDW0	803 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	RNF183	Q96D59	192 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	FBXO17	Q96EF6	278 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	PGLYRP2	Q96PD5	576 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	NLRC4	Q9NPP4	1024 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	SMARCAL1	Q9NZC9	954 aa		4.65	□□□□□ -1.67
VPS13C-208	ENST00000559119	hDV102S1	A0JD36	115 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	FAM172BP	A6NC97	362 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	FAM90A20P	A6NIJ5	464 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119		J3KR12	359 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	CTPS1	P17812	591 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	KCNA5	P22460	613 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	SERPINF1	P36955	418 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	LIFR	P42702	1097 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	MTNR1A	P48039	350 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	MVD	P53602	400 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	ECT2L	Q008S8	904 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	THOC5	Q13769	683 aa	Known RBP	4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	ME3	Q16798	604 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	LCE1F	Q5T754	118 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	FAM69B	Q5VUD6	431 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	SULT6B1	Q6IMI4	303 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	CCDC129	Q6ZRS4	1044 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	FOXL2NB	Q6ZUU3	175 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	SYT13	Q7L8C5	426 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	DENND6A	Q8IWF6	608 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	DUX3	Q96PT4	197 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	EBF2	Q9HAK2	575 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	PLEKHA2	Q9HB19	425 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	ATP8A2	Q9NTI2	1148 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	LRCH1	Q9Y2L9	728 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	ADAM18	Q9Y3Q7	739 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119	SNX9	Q9Y5X1	595 aa		4.64	□□□□□ -1.67
VPS13C-208	ENST00000559119		A0A087WV62	115 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	SLC25A17	O43808	307 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	MYL1	P05976	194 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	PTPN9	P43378	593 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	VEGFC	P49767	419 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	ZNF132	P52740	706 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	RPE65	Q16518	533 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	KRT71	Q3SY84	523 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	GHDC	Q8N2G8	530 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	GEMIN8	Q9NWZ8	242 aa	Known RBP	4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	GAB2	Q9UQC2	676 aa		4.63	□□□□□ -1.67
VPS13C-208	ENST00000559119	ANTXRL	A6NF34	631 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	KRTAP9-6	A8MVA2	160 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	P2RY10	O00398	339 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	KDM4B	O94953	1096 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	ATP1A1	P05023	1023 aa	Known RBP	4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	TFPI	P10646	304 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	PDIA3	P30101	505 aa	Known RBP	4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	RBM5	P52756	815 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	GOLGA8F	Q08AF8	430 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	LIN54	Q6MZP7	749 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	RASGRP2	Q7LDG7	609 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	MON1A	Q86VX9	555 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	SFR1	Q86XK3	245 aa		4.62	□□□□□ -1.67
VPS13C-208	ENST00000559119	ZNF441	Q8N8Z8	693 aa		4.62	□□□□□ -1.67

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