RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 QTRT2Q9H974 415 aaKnown RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 RMI1Q9H9A7 625 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 SPAG4Q9NPE6 437 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 EXD2Q9NVH0 621 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 NCKIPSDQ9NZQ3 722 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 TBC1D30Q9Y2I9 924 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 ST14Q9Y5Y6 855 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 GOLGA4Q13439 2230 aaKnown RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 TIMM44O43615 452 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 KDM1AO60341 852 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 ENDOD1O94919 500 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 AHSGP02765 367 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 PTPRAP18433 802 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 VARSP26640 1264 aaKnown RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 HMOX2P30519 316 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 CHRNA4P43681 627 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 CACNB2Q08289 660 aaPredicted RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 SPANXN3Q5MJ09 141 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 KCTD8Q6ZWB6 473 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 SHCBP1Q8NEM2 672 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 BCO2Q9BYV7 579 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 PDGFDQ9GZP0 370 aaPredicted RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 DDIT4Q9NX09 232 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 MKS1Q9NXB0 559 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 HACL1Q9UJ83 578 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 CRYL1Q9Y2S2 319 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 MTF2Q9Y483 593 aaPredicted RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 TRIM17Q9Y577 477 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 KIAA1217Q5T5P2 1943 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 SIPA1L1O43166 1804 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 A0A087WXM4 84 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 PRSS51A0A1B0GVH4 220 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 TTC24A2A3L6 582 aaPredicted RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 HUS1O60921 280 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 GABBR2O75899 941 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 IL10P22301 178 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 MAP3K7CLP57077 242 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 C1QTNF8P60827 252 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 CYP2A13Q16696 494 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 C6orf183Q5T699 404 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 PSTKQ8IV42 348 aaKnown RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 TXNDC5Q8NBS9 432 aaKnown RBP11.45□□□□□ -0.58
LDLR-208ENST00000558518 OR52K2Q8NGK3 314 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 HBEGFQ99075 208 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 DRC3Q9H069 523 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 C2orf40Q9H1Z8 148 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 ALG9Q9H6U8 611 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 TNFRSF12AQ9NP84 129 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 SACM1LQ9NTJ5 587 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 GPRC5DQ9NZD1 345 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 DAPK2Q9UIK4 370 aa11.45□□□□□ -0.58
LDLR-208ENST00000558518 ANGPT2O15123 496 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 INSRRP14616 1297 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 KCNA5P22460 613 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 TAS2R39P59534 338 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 CHERPQ8IWX8 916 aaKnown RBP11.44□□□□□ -0.58
LDLR-208ENST00000558518 RAVER1Q8IY67 606 aaKnown RBP11.44□□□□□ -0.58
LDLR-208ENST00000558518 CLEC4FQ8N1N0 589 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 HEXDCQ8WVB3 486 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 DLG3Q92796 817 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 GPATCH1Q9BRR8 931 aaKnown RBP11.44□□□□□ -0.58
LDLR-208ENST00000558518 ADI1Q9BV57 179 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 FICDQ9BVA6 458 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 FSD1LQ9BXM9 530 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.44□□□□□ -0.58
LDLR-208ENST00000558518 COMMD10Q9Y6G5 202 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 H3BMM5 538 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 IL18RAPO95256 599 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 MPOP05164 745 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 SNRPB2P08579 225 aaKnown RBP11.44□□□□□ -0.58
LDLR-208ENST00000558518 ATP6V1B2P21281 511 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 ELK4P28324 431 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 PLA2G4EQ3MJ16 856 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 METTL21CQ5VZV1 264 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 TMEM214Q6NUQ4 689 aaKnown RBP11.44□□□□□ -0.58
LDLR-208ENST00000558518 KHSRPQ92945 711 aaKnown RBP eCLIP11.44□□□□□ -0.58
LDLR-208ENST00000558518 VPS33AQ96AX1 596 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 TUBGCP3Q96CW5 907 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 PLEKHA8Q96JA3 519 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 RNF145Q96MT1 663 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 CACNA2D2Q9NY47 1150 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 PCDHGA7Q9Y5G6 932 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.44□□□□□ -0.58
LDLR-208ENST00000558518 SLX4Q8IY92 1834 aa11.44□□□□□ -0.58
LDLR-208ENST00000558518 LRRC14BA6NHZ5 514 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 ZBTB7AO95365 584 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 PTPN3P26045 913 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 MAGEA3P43357 314 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 NR2C2P49116 596 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 ZBTB17Q13105 803 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 APOFQ13790 326 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 SPIDRQ14159 915 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 INSCQ1MX18 579 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 RBM20Q5T481 1227 aaKnown RBP11.43□□□□□ -0.58
LDLR-208ENST00000558518 ZYG11AQ6WRX3 759 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 KRT27Q7Z3Y8 459 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 CENPSQ8N2Z9 138 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 KLHL25Q9H0H3 589 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 FADS3Q9Y5Q0 445 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 PPP6CO00743 305 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms