RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SNRPB2P08579 225 aaKnown RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 IMPDH2P12268 514 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 KCNE1P15382 129 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TKTP29401 623 aaKnown RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 MSX2P35548 267 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 GLRBP48167 497 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 RAB15P59190 212 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 ESRRGP62508 458 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 PITX1P78337 314 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 ILF2Q12905 390 aaKnown RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 FASTKQ14296 549 aaKnown RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 LPIN1Q14693 890 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 SPATS1Q496A3 300 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 OLFML2BQ68BL8 750 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 REP15Q6BDI9 236 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 PPP4R4Q6NUP7 873 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TRIM67Q6ZTA4 783 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 KIAA0408Q6ZU52 694 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 LPCAT2Q7L5N7 544 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 SLC41A1Q8IVJ1 513 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 HERC6Q8IVU3 1022 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 RBM12BQ8IXT5 1001 aaKnown RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 PPHLN1Q8NEY8 458 aaKnown RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TNIP2Q8NFZ5 429 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 ADAM32Q8TC27 787 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 SPPL2BQ8TCT7 592 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 ROPN1LQ96C74 230 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 CAMKK2Q96RR4 588 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TMEM79Q9BSE2 394 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TRIM15Q9C019 465 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 WDR6Q9NNW5 1121 aaKnown RBP16.45■□□□□ 0.22
SHMT2-231ENST00000557433 LMCD1Q9NZU5 365 aa16.45■□□□□ 0.22
SHMT2-231ENST00000557433 TSC2P49815 1807 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 A0A087WXM4 84 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 BBIP1A8MTZ0 92 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 E7ENX8 843 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 CXCL11O14625 94 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 JUNP05412 331 aaKnown RBP16.44■□□□□ 0.22
SHMT2-231ENST00000557433 C7P10643 843 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 CCR10P46092 362 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 EMP3P54852 163 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 CYTH1Q15438 398 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 TSTD2Q5T7W7 516 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 SYPL2Q5VXT5 272 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 C8orf82Q6P1X6 216 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-231ENST00000557433 ERO1BQ86YB8 467 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 TP53INP2Q8IXH6 220 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 MFSD2AQ8NA29 543 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 NETO2Q8NC67 525 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 ADAMTS16Q8TE57 1224 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 LPGAT1Q92604 370 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 DPF3Q92784 378 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 ZUFSPQ96AP4 578 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 NXNL1Q96CM4 212 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 RHOBTB2Q9BYZ6 727 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 VTA1Q9NP79 307 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 PDGFCQ9NRA1 345 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 TMPRSS4Q9NRS4 437 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 DNAAF2Q9NVR5 837 aaKnown RBP16.44■□□□□ 0.22
SHMT2-231ENST00000557433 TMEM181Q9P2C4 612 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 ZNHIT2Q9UHR6 403 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 CROTQ9UKG9 612 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 NRCAMQ92823 1304 aa16.44■□□□□ 0.22
SHMT2-231ENST00000557433 SYNJ2BP-COX16A0A087WUM0 186 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 HCRTO43612 131 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 SRP72O76094 671 aaKnown RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 RECQL4O94761 1208 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 PGK1P00558 417 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 RBP1P09455 135 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 GABRB3P28472 473 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 TTKP33981 857 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 CD151P48509 253 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 SLC12A2P55011 1212 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 GRIK4Q16099 956 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 FAM83EQ2M2I3 478 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 XKR4Q5GH76 650 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 PRMT9Q6P2P2 845 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 GK5Q6ZS86 529 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 CATSPER4Q7RTX7 472 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 SLC22A9Q8IVM8 553 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 NPWQ8N729 165 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 SHCBP1Q8NEM2 672 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 LRTOMTQ8WZ04 291 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 FCRL5Q96RD9 977 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 TBL1YQ9BQ87 522 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 C16orf70Q9BSU1 422 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 PRKD2Q9BZL6 878 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 POMKQ9H5K3 350 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 TRPC7Q9HCX4 862 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 CNGB3Q9NQW8 809 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 OLAHQ9NV23 265 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 GTSE1Q9NYZ3 720 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 COX16Q9P0S2 106 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 FNDC1Q4ZHG4 1894 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 RBM47A0AV96 593 aaKnown RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 RRN3P2A6NIE6 340 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 FAM72CH0Y354 149 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 HTRA2O43464 458 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 GPC4O75487 556 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 TPH1P17752 444 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms