RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	PROSER1	Q86XN7	944 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	POC5	Q8NA72	575 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ATG16L2	Q8NAA4	619 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	OR7A2P	Q8NGA2	310 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ACMSD	Q8TDX5	336 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	C7orf43	Q8WVR3	580 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	VPS33A	Q96AX1	596 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	C19orf60	Q96EN9	201 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	FBXL20	Q96IG2	436 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	KCNS3	Q9BQ31	491 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	MRPL57	Q9BQC6	102 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	UGT2B28	Q9BY64	529 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TRIM39	Q9HCM9	518 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	XPNPEP1	Q9NQW7	623 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PLK2	Q9NYY3	685 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	USE1	Q9NZ43	259 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	SNX8	Q9Y5X2	465 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TLL2	Q9Y6L7	1015 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ASB14	A6NK59	587 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	VPS4B	O75351	444 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	METTL18	O95568	372 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	DBT	P11182	482 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CPB1	P15086	417 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ACO1	P21399	889 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	GCA	P28676	217 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	GTF2A2	P52657	109 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TOP3A	Q13472	1001 aa	Predicted RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	GRM3	Q14832	879 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	DLG2	Q15700	870 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PAN2	Q504Q3	1202 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZC3H12B	Q5HYM0	836 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	EPGN	Q6UW88	154 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	C15orf52	Q6ZUT6	534 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF540	Q8NDQ6	660 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	LPCAT1	Q8NF37	534 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	LENG9	Q96B70	501 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	BTBD9	Q96Q07	612 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ACE2	Q9BYF1	805 aa	Predicted RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	BPIFA1	Q9NP55	256 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	POLE4	Q9NR33	117 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TMEM161A	Q9NX61	479 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	INVS	Q9Y283	1065 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	DDX60L	Q5H9U9	1706 aa	Known RBP	5.03	□□□□□ -1.61
SYNE2-223	ENST00000557005	DLEC1	Q9Y238	1755 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	C5orf58	C9J3I9	102 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	LZTS3	O60299	673 aa	Predicted RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	ENDOD1	O94919	500 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	SEC24A	O95486	1093 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	XRCC1	P18887	633 aa	Predicted RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	MZF1	P28698	734 aa	Predicted RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	BACE1	P56817	501 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	KLF1	Q13351	362 aa	Predicted RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	DACT2	Q5SW24	774 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	TMEM198	Q66K66	360 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	FBXL19	Q6PCT2	694 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	CRTC3	Q6UUV7	619 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	RPS27L	Q71UM5	84 aa	Known RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	PAGE2	Q7Z2X7	111 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	ERI1	Q8IV48	349 aa	Known RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	COPS5	Q92905	334 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	FAM120B	Q96EK7	910 aa	Known RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	SENP6	Q9GZR1	1112 aa	Predicted RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	CATSPERZ	Q9NTU4	200 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	MRGBP	Q9NV56	204 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	TUBGCP4	Q9UGJ1	667 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZDHHC2	Q9UIJ5	367 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	FZD10	Q9ULW2	581 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	C19orf81	C9J6K1	198 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	PDLIM1	O00151	329 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	SNAP91	O60641	907 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	PEX10	O60683	326 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	T-ENOL	P0DO92	83 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	ODC1	P11926	461 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	IMPDH2	P12268	514 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	MMP8	P22894	467 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	XPA	P23025	273 aa	Predicted RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	POU1F1	P28069	291 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	TM4SF1	P30408	202 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	GMPR	P36959	345 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	GMPS	P49915	693 aa	Predicted RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	MRPS5	P82675	430 aa	Known RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	BNIP2	Q12982	314 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	NR6A1	Q15406	480 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZACN	Q401N2	412 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF484	Q5JVG2	852 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	FSTL4	Q6MZW2	842 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	ABI1	Q8IZP0	508 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC4A11	Q8NBS3	891 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	UTP15	Q8TED0	518 aa	Known RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	OMA1	Q96E52	524 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	P2RY11	Q96G91	374 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	CHID1	Q9BWS9	393 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	CHRAC1	Q9NRG0	131 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	RBM22	Q9NW64	420 aa	Known RBP eCLIP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	ABI2	Q9NYB9	513 aa	Predicted RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	PIM2	Q9P1W9	311 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	KIAA1257	Q9ULG3	409 aa		5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	UBQLN1	Q9UMX0	589 aa	Known RBP	5.02	□□□□□ -1.61
SYNE2-223	ENST00000557005	KANSL1L	A0AUZ9	987 aa		5.02	□□□□□ -1.61

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