RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 MAGEA3P43357 314 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 NEK3P51956 506 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 KBTBD12Q3ZCT8 623 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 CPXM2Q8N436 756 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 DNASE1L2Q92874 299 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 BHMTQ93088 406 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 FERMT1Q9BQL6 677 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 LRMDAQ9H2I8 198 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 MANSC1Q9H8J5 431 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 ZC3H7BQ9UGR2 993 aaKnown RBP17.64■□□□□ 0.42
SHOX-204ENST00000554971 RPL26L1Q9UNX3 145 aaKnown RBP17.64■□□□□ 0.42
SHOX-204ENST00000554971 HEY1Q9Y5J3 304 aa17.64■□□□□ 0.42
SHOX-204ENST00000554971 TRAFD1O14545 582 aaPredicted RBP17.64■□□□□ 0.41
SHOX-204ENST00000554971 WFS1O76024 890 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 SNRPAP09012 282 aaKnown RBP17.64■□□□□ 0.41
SHOX-204ENST00000554971 MLNP12872 115 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 GJA4P35212 333 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 SLC11A2P49281 568 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 MESP2Q0VG99 397 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 SF3A3Q12874 501 aaKnown RBP eCLIP17.64■□□□□ 0.41
SHOX-204ENST00000554971 EFTUD2Q15029 972 aaKnown RBP eCLIP17.64■□□□□ 0.41
SHOX-204ENST00000554971 RAP1GAP2Q684P5 730 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 TXNDC11Q6PKC3 985 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 OTOAQ7RTW8 1153 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 C14orf80Q86SX3 495 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 C12orf40Q86WS4 652 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 IGDCC3Q8IVU1 814 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 ZNF683Q8IZ20 524 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 ATP6V0D2Q8N8Y2 350 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 NTAN1Q96AB6 310 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 MRRFQ96E11 262 aaKnown RBP17.64■□□□□ 0.41
SHOX-204ENST00000554971 COL25A1Q9BXS0 654 aaPredicted RBP17.64■□□□□ 0.41
SHOX-204ENST00000554971 PLK2Q9NYY3 685 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 CHD5Q8TDI0 1954 aa17.64■□□□□ 0.41
SHOX-204ENST00000554971 KRBA1A5PL33 1030 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 FAM72CH0Y354 149 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 TSPAN3O60637 253 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 NFATC1O95644 943 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 ADRA1DP25100 572 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 CNTFP26441 200 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 FDFT1P37268 417 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 ETV4P43268 484 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 SERPINB9P50453 376 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 ZXDAP98168 799 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 SCAPQ12770 1279 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 ITPRIPL2Q3MIP1 535 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 FAM72AQ5TYM5 149 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 FAM72DQ6L9T8 149 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 FAM72BQ86X60 149 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 CCNJLQ8IV13 435 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 UBALD2Q8IYN6 164 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 QKIQ96PU8 341 aaKnown RBP eCLIP17.63■□□□□ 0.41
SHOX-204ENST00000554971 SIK2Q9H0K1 926 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 ETNK1Q9HBU6 452 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 SLCO1B3Q9NPD5 702 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 MARK1Q9P0L2 795 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 CLEC4EQ9ULY5 219 aa17.63■□□□□ 0.41
SHOX-204ENST00000554971 KRT38O76015 456 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 CCND1P24385 295 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 MLLT6P55198 1093 aaPredicted RBP17.62■□□□□ 0.41
SHOX-204ENST00000554971 RPS24P62847 133 aaKnown RBP17.62■□□□□ 0.41
SHOX-204ENST00000554971 FBXL22Q6P050 247 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 CAND1Q86VP6 1230 aaKnown RBP17.62■□□□□ 0.41
SHOX-204ENST00000554971 PYROXD2Q8N2H3 581 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 HAPLN3Q96S86 360 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 TRIM55Q9BYV6 548 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 MYLK2Q9H1R3 596 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 CD248Q9HCU0 757 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 BAIAP2L1Q9UHR4 511 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 GGT7Q9UJ14 662 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 AP4E1Q9UPM8 1137 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 NEU3Q9UQ49 428 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 CHKBQ9Y259 395 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 PIAS3Q9Y6X2 628 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 PENKP01210 267 aaPredicted RBP17.62■□□□□ 0.41
SHOX-204ENST00000554971 C1QAP02745 245 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 ADH5P11766 374 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 TACR2P21452 398 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 HOXD9P28356 352 aaPredicted RBP17.62■□□□□ 0.41
SHOX-204ENST00000554971 ARL4AP40617 200 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 KCNJ2P63252 427 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 PFKPQ01813 784 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 SEMA5AQ13591 1074 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 DBN1Q16643 649 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 CA9Q16790 459 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 SLC44A4Q53GD3 710 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 ETFBKMTQ8IXQ9 262 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 RAB3IL1Q8TBN0 382 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 IGSF8Q969P0 613 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 ERP27Q96DN0 273 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 EBNA1BP2Q99848 306 aaKnown RBP17.62■□□□□ 0.41
SHOX-204ENST00000554971 GPATCH2LQ9NWQ4 482 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 VANGL2Q9ULK5 521 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 FZD10Q9ULW2 581 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 CA14Q9ULX7 337 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 MTO1Q9Y2Z2 717 aaKnown RBP17.62■□□□□ 0.41
SHOX-204ENST00000554971 TTLL3Q9Y4R7 772 aa17.62■□□□□ 0.41
SHOX-204ENST00000554971 FRYLO94915 3013 aa17.61■□□□□ 0.41
SHOX-204ENST00000554971 NEDD8-MDP1E9PL57 170 aa17.61■□□□□ 0.41
SHOX-204ENST00000554971 TRIM24O15164 1050 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms