RNA–Protein interactions for RNA: ENST00000552301.1

PRPF40B-216, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 912 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-216ENST00000552301 SHROOM3Q8TF72 1996 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 ZNF292O60281 2723 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 A0A1W2PPC4 97 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 C16orf96A6NNT2 1141 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 NEMP1O14524 444 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 APOL1O14791 398 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 PJA2O43164 708 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 NEBLO76041 1014 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 PCDH8O95206 1070 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 ZFXP17010 805 aaPredicted RBP18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 XPAP23025 273 aaPredicted RBP18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 NUDT1P36639 197 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 GARSP41250 739 aaKnown RBP18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 MAPK8P45983 427 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 PPP2CBP62714 309 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 PPP2CAP67775 309 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 GALNT2Q10471 571 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 RSPO4Q2I0M5 234 aaPredicted RBP18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 TIGD7Q6NT04 549 aaPredicted RBP18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 PQLC3Q8N755 202 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 TSEN2Q8NCE0 465 aaKnown RBP18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 RAB7BQ96AH8 199 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 GTPBP2Q9BX10 602 aaKnown RBP18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 CPEB1Q9BZB8 566 aaKnown RBP18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 LACRTQ9GZZ8 138 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 CAPN10Q9HC96 672 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 TMEM9BQ9NQ34 198 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 HAUS2Q9NVX0 235 aa18.72■□□□□ 0.59
PRPF40B-216ENST00000552301 ARHGAP6O43182 974 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 GDF9O60383 454 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 MAFKO60675 156 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 RNGTTO60942 597 aaKnown RBP18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 MAP3K6O95382 1288 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 ENGP17813 658 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 MAT2AP31153 395 aaKnown RBP18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 MMP13P45452 471 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 CSNK1DP48730 415 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 AFF3P51826 1226 aaKnown RBP18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 GBE1Q04446 702 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 SLC10A7Q0GE19 358 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 SETMARQ53H47 684 aaPredicted RBP18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 MARC1Q5VT66 337 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 NEK5Q6P3R8 708 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 SRLQ86TD4 932 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 TRIM69Q86WT6 500 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 CCDC50Q8IVM0 306 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 PSKH2Q96QS6 385 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 TUBGCP5Q96RT8 1024 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 ATP13A3Q9H7F0 1226 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 AASDHPPTQ9NRN7 309 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 RXFP3Q9NSD7 469 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 SALL4Q9UJQ4 1053 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 HEY1Q9Y5J3 304 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 DUSP10Q9Y6W6 482 aa18.71■□□□□ 0.59
PRPF40B-216ENST00000552301 CACNA1EQ15878 2313 aa18.71■□□□□ 0.58
PRPF40B-216ENST00000552301 A0A1W2PQU0 124 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 MACROD2A1Z1Q3 448 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 RNF103O00237 685 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 INSIG1O15503 277 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 PIGNO95427 931 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 SERPINA4P29622 427 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 SCNN1BP51168 640 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 LIMK1P53667 647 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 TAS2R38P59533 333 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 AP1S1P61966 158 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 DYNLT1P63172 113 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 TFDP2Q14188 446 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 SLC45A4Q5BKX6 768 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 STPG1Q5TH74 334 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 MFSD7Q6UXD7 560 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 HORMAD1Q86X24 394 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 KATNAL2Q8IYT4 538 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 CCNYQ8ND76 341 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 KIAA1524Q8TCG1 905 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 SKA1Q96BD8 255 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 RBM41Q96IZ5 413 aaKnown RBP18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 SERAC1Q96JX3 654 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 ZDHHC5Q9C0B5 715 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 TM9SF3Q9HD45 589 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 FSCN3Q9NQT6 498 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 DKK3Q9UBP4 350 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 DMTF1Q9Y222 760 aa18.7■□□□□ 0.58
PRPF40B-216ENST00000552301 C3orf70A6NLC5 250 aaPredicted RBP18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 ARHGAP33O14559 1287 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 LATO43561 262 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 ZRANB2O95218 330 aaKnown RBP eCLIP18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 RGRP47804 291 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 ID4P47928 161 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 GRIA4P48058 902 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 RACK1P63244 317 aaKnown RBP18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 BCL2L1Q07817 233 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 NSUN2Q08J23 767 aaKnown RBP eCLIP18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 GRIK2Q13002 908 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 SLC9A4Q6AI14 798 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 NAPEPLDQ6IQ20 393 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 KIAA1161Q6NSJ0 714 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 TTC7BQ86TV6 843 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 SYCE1Q8N0S2 351 aa18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 ANP32BQ92688 251 aaKnown RBP18.69■□□□□ 0.58
PRPF40B-216ENST00000552301 FEM1CQ96JP0 617 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms