RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ZDHHC17Q8IUH5 632 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 CNGA4Q8IV77 575 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 DDIASQ8IXT1 998 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 ADSSL1Q8N142 457 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 PDILTQ8N807 584 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 RASSF8Q8NHQ8 419 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 EME1Q96AY2 570 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 FTOQ9C0B1 505 aaKnown RBP eCLIP4.37□□□□□ -1.71
VPS29-205ENST00000548539 GHITMQ9H3K2 345 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 TBC1D29Q9UFV1 150 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 CORO1CQ9ULV4 474 aaPredicted RBP4.37□□□□□ -1.71
VPS29-205ENST00000548539 SLC45A1Q9Y2W3 748 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 PCDHGB5Q9Y5G0 923 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 KCNE2Q9Y6J6 123 aa4.37□□□□□ -1.71
VPS29-205ENST00000548539 FOXO6A8MYZ6 492 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 MLYCDO95822 493 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 LAMP2P13473 410 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 SLC2A4P14672 509 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 CPOXP36551 454 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 DPP6P42658 865 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 PLCD1P51178 756 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 CLNS1AP54105 237 aaKnown RBP4.36□□□□□ -1.71
VPS29-205ENST00000548539 RPL7AP62424 266 aaKnown RBP4.36□□□□□ -1.71
VPS29-205ENST00000548539 GHRHRQ02643 423 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 CFHR1Q03591 330 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 LAMB3Q13751 1172 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 MIDNQ504T8 468 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 MEX3CQ5U5Q3 659 aaKnown RBP4.36□□□□□ -1.71
VPS29-205ENST00000548539 SPATA1Q5VX52 437 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 SLC18B1Q6NT16 456 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 HMBOX1Q6NT76 420 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 CDC73Q6P1J9 531 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 AAGABQ6PD74 315 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 KLHL24Q6TFL4 600 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 ZNF793Q6ZN11 406 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 IGFN1Q86VF2 1251 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 LURAP1LQ8IV03 231 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 DPP10Q8N608 796 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 LRRC57Q8N9N7 239 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 C11orf65Q8NCR3 313 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 ZMIZ2Q8NF64 920 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.36□□□□□ -1.71
VPS29-205ENST00000548539 CREB3L4Q8TEY5 395 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 IGFBPL1Q8WX77 278 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 USP6NLQ92738 828 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 INTS12Q96CB8 462 aaKnown RBP4.36□□□□□ -1.71
VPS29-205ENST00000548539 TREX2Q9BQ50 279 aaPredicted RBP4.36□□□□□ -1.71
VPS29-205ENST00000548539 QTRT1Q9BXR0 403 aaKnown RBP4.36□□□□□ -1.71
VPS29-205ENST00000548539 GLIS2Q9BZE0 524 aaPredicted RBP4.36□□□□□ -1.71
VPS29-205ENST00000548539 TMEM45AQ9NWC5 275 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 LIMA1Q9UHB6 759 aaKnown RBP4.36□□□□□ -1.71
VPS29-205ENST00000548539 RABGAP1Q9Y3P9 1069 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 CLDN16Q9Y5I7 305 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 CAPN7Q9Y6W3 813 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 MST1RQ04912 1400 aa4.36□□□□□ -1.71
VPS29-205ENST00000548539 TRBV5-7A0A0A0MS05 114 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 FAM237BA0A1B0GVD1 139 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 SMIM35A0A1B0GVV1 85 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 FAM157AC9JC47 383 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 K7ENM7 598 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 ADAM10O14672 748 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 AHCYL1O43865 530 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 SEC14L2O76054 403 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 CCNDBP1O95273 360 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 TUBB4AP04350 444 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 BSGP35613 385 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 ARL1P40616 181 aaPredicted RBP4.35□□□□□ -1.71
VPS29-205ENST00000548539 NR4A2P43354 598 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 MMP13P45452 471 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 BLKP51451 505 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 CLCNKBP51801 687 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 YWHAZP63104 245 aaKnown RBP4.35□□□□□ -1.71
VPS29-205ENST00000548539 CEBPZQ03701 1054 aaKnown RBP4.35□□□□□ -1.71
VPS29-205ENST00000548539 ZNF91Q05481 1191 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 RUNX2Q13950 521 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 PPP2R5BQ15173 497 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 LRRC8EQ6NSJ5 796 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 TTI2Q6NXR4 508 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 CYP20A1Q6UW02 462 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 C16orf54Q6UWD8 224 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 TDRPQ86YL5 185 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 KIAA2013Q8IYS2 634 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 TTC39CQ8N584 583 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 CCDC89Q8N998 374 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 SMRP1Q8NCR6 262 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 HDAC7Q8WUI4 952 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 WDFY2Q96P53 400 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 FAM118BQ9BPY3 351 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 EBF3Q9H4W6 596 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 WDR6Q9NNW5 1121 aaKnown RBP4.35□□□□□ -1.71
VPS29-205ENST00000548539 PAPOLBQ9NRJ5 636 aaKnown RBP4.35□□□□□ -1.71
VPS29-205ENST00000548539 TMEM184CQ9NVA4 438 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 ADD3Q9UEY8 706 aaKnown RBP4.35□□□□□ -1.71
VPS29-205ENST00000548539 FBXO40Q9UH90 709 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 VPS28Q9UK41 221 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 RAP2CQ9Y3L5 183 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 ADGRF5Q8IZF2 1346 aa4.35□□□□□ -1.71
VPS29-205ENST00000548539 IGKV2D-30A0A075B6S6 120 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 A0A1W2PPC1 479 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 CBY3A6NI87 242 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms