RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 NT5C1AQ9BXI3 368 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CLPBQ9H078 707 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 INTS2Q9H0H0 1204 aaKnown RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 GPN2Q9H9Y4 310 aaPredicted RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 RDH14Q9HBH5 336 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 PNPLA8Q9NP80 782 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 NPHS2Q9NP85 383 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CCDC39Q9UFE4 941 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 SLC25A13Q9UJS0 675 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 STOML2Q9UJZ1 356 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 PPM1HQ9ULR3 514 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 GPR34Q9UPC5 381 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 TRPM6Q9BX84 2022 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CELSR2Q9HCU4 2923 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CRYBG3Q68DQ2 2970 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ESPL1Q14674 2120 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LOC101059948A0A1B0GTJ6 334 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LRRIQ3A6PVS8 624 aaPredicted RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 YJEFN3A6XGL0 299 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 TCP11X1B4DZS4 312 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 E7ENQ6 273 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LMO7DNF2Z398 122 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 J3QL48 77 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 TULP2O00295 520 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 NEMP1O14524 444 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 MCF2LO15068 1137 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 IRAK2O43187 625 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 HNRNPRO43390 633 aaKnown RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 SLC26A4O43511 780 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 EXOC3O60645 756 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 RAD1O60671 282 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 TNFRSF21O75509 655 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ENDOD1O94919 500 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LUC7L3O95232 432 aaKnown RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 CTSLP07711 333 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 FGF3P11487 239 aaPredicted RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 BMP2P12643 396 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LCP1P13796 627 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 TCN2P20062 427 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 PDCP20941 246 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ALDH4A1P30038 563 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 CHRNA3P32297 505 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LONP1P36776 959 aaKnown RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 COPB1P53618 953 aaKnown RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 SLC8A3P57103 927 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 PPARDQ03181 441 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 CCDC15Q0P6D6 951 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ALCAMQ13740 583 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ERV3-1Q14264 604 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ARHGAP44Q17R89 818 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 KRTAP21-3Q3LHN1 58 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 MAP9Q49MG5 647 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 NADK2Q4G0N4 442 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 MPP7Q5T2T1 576 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 PIP5KL1Q5T9C9 394 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 CEP135Q66GS9 1140 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 SP5Q6BEB4 398 aaPredicted RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 NADSYN1Q6IA69 706 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 NEK5Q6P3R8 708 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 STXBP4Q6ZWJ1 553 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 PIM3Q86V86 326 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 PIGZQ86VD9 579 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 CIR1Q86X95 450 aaPredicted RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 HID1Q8IV36 788 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 UNC45BQ8IWX7 931 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 MCEMP1Q8IX19 187 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 CCDC65Q8IXS2 484 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 CCDC13Q8IYE1 715 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 MEIOBQ8N635 442 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ARL10Q8N8L6 244 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 XXYLT1Q8NBI6 393 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 PCDH19Q8TAB3 1148 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 GRIN3AQ8TCU5 1115 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 PLEKHO2Q8TD55 490 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 GPBAR1Q8TDU6 330 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 EPS8L3Q8TE67 593 aaKnown RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 FRS2Q8WU20 508 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ART4Q93070 314 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 TSACCQ96A04 125 aaPredicted RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 TMEM159Q96B96 161 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 TCTN2Q96GX1 697 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 FEM1CQ96JP0 617 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 C5orf34Q96MH7 638 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 PRICKLE1Q96MT3 831 aaPredicted RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 TAAR9Q96RI9 348 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 HAPLN3Q96S86 360 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LRRC61Q9BV99 259 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 DNAI2Q9GZS0 605 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 NUCKS1Q9H1E3 243 aaKnown RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LRRC4Q9HBW1 653 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 OLFML3Q9NRN5 406 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ABCC13Q9NSE7 274 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 SLC39A1Q9NY26 324 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ZDHHC3Q9NYG2 299 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 RRN3Q9NYV6 651 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LUZP4Q9P127 313 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LRIT1Q9P2V4 623 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 ERRFI1Q9UJM3 462 aaPredicted RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 PNMA8BQ9ULN7 279 aaPredicted RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 B3GALT1Q9Y5Z6 326 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms