RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 PTPN3P26045 913 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 CD6P30203 668 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 MMP13P45452 471 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 GEMIN4P57678 1058 aaKnown RBP13.25□□□□□ -0.29
CHFR-216ENST00000538235 COPS2P61201 443 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 SIM2Q14190 667 aaPredicted RBP13.25□□□□□ -0.29
CHFR-216ENST00000538235 CCDC6Q16204 474 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 ZNF569Q5MCW4 686 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 PRR23BQ6ZRT6 265 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 ADAT2Q7Z6V5 191 aaKnown RBP13.25□□□□□ -0.29
CHFR-216ENST00000538235 SRLQ86TD4 932 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 RYBPQ8N488 228 aaPredicted RBP13.25□□□□□ -0.29
CHFR-216ENST00000538235 DCLK2Q8N568 766 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.25□□□□□ -0.29
CHFR-216ENST00000538235 TMIEQ8NEW7 156 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 TRIM58Q8NG06 486 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 ANP32BQ92688 251 aaKnown RBP13.25□□□□□ -0.29
CHFR-216ENST00000538235 FATE1Q969F0 183 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 ZC3H10Q96K80 434 aaKnown RBP13.25□□□□□ -0.29
CHFR-216ENST00000538235 KLHL32Q96NJ5 620 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 CINPQ9BW66 212 aaPredicted RBP13.25□□□□□ -0.29
CHFR-216ENST00000538235 NOD2Q9HC29 1040 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 PARD6AQ9NPB6 346 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 TMEM74BQ9NUR3 256 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 SEPT3Q9UH03 358 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 ATP8A1Q9Y2Q0 1164 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.25□□□□□ -0.29
CHFR-216ENST00000538235 GVINP1Q7Z2Y8 2422 aa13.25□□□□□ -0.29
CHFR-216ENST00000538235 EP300Q09472 2414 aaPredicted RBP13.24□□□□□ -0.29
CHFR-216ENST00000538235 DMXL1Q9Y485 3027 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 DNAH14Q0VDD8 3507 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 PLRG1O43660 514 aaKnown RBP13.24□□□□□ -0.29
CHFR-216ENST00000538235 ADH1BP00325 375 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 JCHAINP01591 159 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 CCNB1P14635 433 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 TGM1P22735 817 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 ITGB7P26010 798 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 MAOBP27338 520 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 RBL1P28749 1068 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 GDF10P55107 478 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 SNRPD1P62314 119 aaKnown RBP13.24□□□□□ -0.29
CHFR-216ENST00000538235 ZBTB16Q05516 673 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 AP1B1Q10567 949 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 TFDP2Q14188 446 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 FGL2Q14314 439 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 RPS6KA1Q15418 735 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 GLIPR1L2Q4G1C9 344 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 USP39Q53GS9 565 aaKnown RBP13.24□□□□□ -0.29
CHFR-216ENST00000538235 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.24□□□□□ -0.29
CHFR-216ENST00000538235 USP30Q70CQ3 517 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 PRUNE1Q86TP1 453 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 SLC13A5Q86YT5 568 aaPredicted RBP13.24□□□□□ -0.29
CHFR-216ENST00000538235 CCNYQ8ND76 341 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 SLC35B2Q8TB61 432 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 COG1Q8WTW3 980 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 ECHDC3Q96DC8 303 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 MS4A14Q96JA4 679 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 HSPA12BQ96MM6 686 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 NUDCD1Q96RS6 583 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 RBM22Q9NW64 420 aaKnown RBP eCLIP13.24□□□□□ -0.29
CHFR-216ENST00000538235 DONSONQ9NYP3 566 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 ZFR2Q9UPR6 939 aaKnown RBP13.24□□□□□ -0.29
CHFR-216ENST00000538235 EFR3BQ9Y2G0 817 aa13.24□□□□□ -0.29
CHFR-216ENST00000538235 PLXNB3Q9ULL4 1909 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 FAM186AA6NE01 2351 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 C16orf96A6NNT2 1141 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 PATE3B3GLJ2 98 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 KCNK3O14649 394 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 NRDCO43847 1150 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 SEMA4FO95754 770 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 PRLP01236 227 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 PRNPP04156 253 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 PDHA1P08559 390 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 ADRB3P13945 408 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 TIMP2P16035 220 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 GM2AP17900 193 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 ITPKAP23677 461 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 CSNK1DP48730 415 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 SCNN1BP51168 640 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 SKOR1P84550 965 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 RPL6Q02878 288 aaKnown RBP13.23□□□□□ -0.29
CHFR-216ENST00000538235 RALGDSQ12967 914 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 HNRNPDQ14103 355 aaKnown RBP13.23□□□□□ -0.29
CHFR-216ENST00000538235 ZNF235Q14590 738 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 RFTN1Q14699 578 aaPredicted RBP13.23□□□□□ -0.29
CHFR-216ENST00000538235 PDK1Q15118 436 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 E2F5Q15329 346 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 SLC45A4Q5BKX6 768 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 MARC1Q5VT66 337 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 SEL1L3Q68CR1 1132 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 TCEAL6Q6IPX3 200 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 LAYNQ6UX15 382 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 GDPD4Q6W3E5 623 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 ERN2Q76MJ5 926 aaKnown RBP13.23□□□□□ -0.29
CHFR-216ENST00000538235 PRPF39Q86UA1 669 aaKnown RBP13.23□□□□□ -0.29
CHFR-216ENST00000538235 ZNF567Q8N184 647 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 UBL4BQ8N7F7 174 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 GLIS1Q8NBF1 620 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 C1orf216Q8TAB5 229 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 TCEAL3Q969E4 200 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms