RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ABHD5Q8WTS1 349 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 WASF1Q92558 559 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 P2RY11Q96G91 374 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 PRR11Q96HE9 360 aaPredicted RBP4.3□□□□□ -1.72
CD44-235ENST00000532339 LYZL4Q96KX0 146 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 RMDN3Q96TC7 470 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 SCNM1Q9BWG6 230 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 UBA5Q9GZZ9 404 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 MAF1Q9H063 256 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 MYLK2Q9H1R3 596 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 AS3MTQ9HBK9 375 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 ZBTB26Q9HCK0 441 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 GRHPRQ9UBQ7 328 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 SLC39A10Q9ULF5 831 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 HEMK1Q9Y5R4 338 aaPredicted RBP4.3□□□□□ -1.72
CD44-235ENST00000532339 SIRT4Q9Y6E7 314 aaPredicted RBP4.3□□□□□ -1.72
CD44-235ENST00000532339 RLFQ13129 1914 aa4.3□□□□□ -1.72
CD44-235ENST00000532339 CEP295Q9C0D2 2601 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 ROCK2O75116 1388 aaKnown RBP4.29□□□□□ -1.72
CD44-235ENST00000532339 FAM234BA2RU67 622 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 EPOPA6NHQ4 379 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 LGALS16A8MUM7 142 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 TTC34A8MYJ7 566 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 KBTBD13C9JR72 458 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 SYT5O00445 386 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 CXCL11O14625 94 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 NPC1O15118 1278 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 SH3BP5O60239 455 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 CCNT2O60583 730 aaKnown RBP4.29□□□□□ -1.72
CD44-235ENST00000532339 NDST3O95803 873 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 GABRB3P28472 473 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 DUSP1P28562 367 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 HOXA7P31268 230 aaPredicted RBP4.29□□□□□ -1.72
CD44-235ENST00000532339 ATICP31939 592 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 THBS3P49746 956 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 SIGLEC14Q08ET2 396 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 BIRC3Q13489 604 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 FHL3Q13643 280 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 PFKFB4Q16877 469 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 MANEAQ5SRI9 462 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 RRAGBQ5VZM2 374 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 RBM44Q6ZP01 1051 aaKnown RBP4.29□□□□□ -1.72
CD44-235ENST00000532339 FASTKD5Q7L8L6 764 aaKnown RBP4.29□□□□□ -1.72
CD44-235ENST00000532339 TFAP2DQ7Z6R9 452 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 UEVLDQ8IX04 471 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 ANKRD13CQ8N6S4 541 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 KCNG4Q8TDN1 519 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 LRRC46Q96FV0 321 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 PRMT6Q96LA8 375 aaPredicted RBP4.29□□□□□ -1.72
CD44-235ENST00000532339 TUBB6Q9BUF5 446 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 TMEM120AQ9BXJ8 343 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 EIF2AQ9BY44 585 aaKnown RBP4.29□□□□□ -1.72
CD44-235ENST00000532339 OBP2BQ9NPH6 170 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 SEMA4BQ9NPR2 832 aaPredicted RBP4.29□□□□□ -1.72
CD44-235ENST00000532339 TM7SF3Q9NS93 570 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 ZBTB40Q9NUA8 1239 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 ABHD10Q9NUJ1 306 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 TMOD4Q9NZQ9 345 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 ANGPTL2Q9UKU9 493 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 DOPEY1Q5JWR5 2465 aa4.29□□□□□ -1.72
CD44-235ENST00000532339 HECTD1Q9ULT8 2610 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 ABCA12Q86UK0 2595 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 FRYLO94915 3013 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 DOCK3Q8IZD9 2030 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 IGLV5-39A0A0G2JS06 123 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 AQP12BA6NM10 295 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 C16orf96A6NNT2 1141 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 F8W810 466 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 ACKR2O00590 384 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 PODXLO00592 558 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 HNRNPDLO14979 420 aaKnown RBP4.28□□□□□ -1.72
CD44-235ENST00000532339 COQ9O75208 318 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 CA3P07451 260 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 SLC3A2P08195 630 aaKnown RBP4.28□□□□□ -1.72
CD44-235ENST00000532339 MYOGP15173 224 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 MATN1P21941 496 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 PBX1P40424 430 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 CCT5P48643 541 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 VPS41P49754 854 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 HTR6P50406 440 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 RPS8P62241 208 aaKnown RBP4.28□□□□□ -1.72
CD44-235ENST00000532339 GPS1Q13098 491 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 MTA1Q13330 715 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 TTLL5Q6EMB2 1281 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 LIN54Q6MZP7 749 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 KIAA1161Q6NSJ0 714 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 TMED8Q6PL24 325 aaPredicted RBP4.28□□□□□ -1.72
CD44-235ENST00000532339 ZNF354CQ86Y25 554 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 TMEM199Q8N511 208 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 ATG16L2Q8NAA4 619 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 GLIS1Q8NBF1 620 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 ADAMTS15Q8TE58 950 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 IPO4Q8TEX9 1081 aaKnown RBP4.28□□□□□ -1.72
CD44-235ENST00000532339 ARNTL2Q8WYA1 636 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 RUBCNQ92622 972 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 MUL1Q969V5 352 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 NLRP4Q96MN2 994 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 WDR24Q96S15 920 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 SENP7Q9BQF6 1050 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 RTKNQ9BST9 563 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms