RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 KDELR1P24390 212 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 HSD17B2P37059 387 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CLCN6P51797 869 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PDX1P52945 283 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ACTR3P61158 418 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ENPEPQ07075 957 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 STX4Q12846 297 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 C1DQ13901 141 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 PUS10Q3MIT2 529 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 ZNF776Q68DI1 518 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 IYDQ6PHW0 289 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 POTEHQ6S545 545 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 MACC1Q6ZN28 852 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PARP9Q8IXQ6 854 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 KATNAL2Q8IYT4 538 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ATAD1Q8NBU5 361 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 SETD7Q8WTS6 366 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 PPP3R2Q96LZ3 170 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CSPG4P5Q96PW8 444 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 NPHS2Q9NP85 383 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 SEMA3GQ9NS98 782 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 SPATA6Q9NWH7 488 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 CAMTA1Q9Y6Y1 1673 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 RBM47A0AV96 593 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 RAD51CO43502 376 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ONECUT3O60422 494 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 USP1O94782 785 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 EPN2O95208 641 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 MAP3K6O95382 1288 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CCDC159P0C7I6 412 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PSMC3P17980 439 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ITGB5P18084 799 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 GGCXP38435 758 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 SPAM1P38567 509 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 NRIP1P48552 1158 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PSMD4P55036 377 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 ITGADQ13349 1161 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 POM121L1PQ3SYA9 428 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ZACNQ401N2 412 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ANXA8L1Q5VT79 327 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ZNF398Q8TD17 642 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CLIP3Q96DZ5 547 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CRELD1Q96HD1 420 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CNDP1Q96KN2 507 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PRDM8Q9NQV8 689 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 TRMT13Q9NUP7 481 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 DUSP12Q9UNI6 340 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 HPSEQ9Y251 543 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CAB39Q9Y376 341 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 MED1Q15648 1581 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 E2F8A0AVK6 867 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 TMEM150BA6NC51 233 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ARL5CA6NH57 179 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CES2O00748 559 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 NRP1O14786 923 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 UBDO15205 165 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 VEGFDO43915 354 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ATP9AO75110 1047 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 DEAF1O75398 565 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 UBXN7O94888 489 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PCCBP05166 539 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PPIBP23284 216 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 NUP62P37198 522 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 TOB1P50616 345 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 MLLT1Q03111 559 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 SLC25A52Q3SY17 297 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ZNF618Q5T7W0 954 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 SDHAF4Q5VUM1 108 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 RFX8Q6ZV50 586 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 DET1Q7L5Y6 550 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PHF13Q86YI8 300 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 FAM98AQ8NCA5 519 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 OTUB2Q96DC9 234 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 OLFM3Q96PB7 478 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 TMEM121Q9BTD3 319 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 FAM83DQ9H4H8 585 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 IL1RAPL1Q9NZN1 696 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PPIEQ9UNP9 301 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 USP15Q9Y4E8 981 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 MAFBQ9Y5Q3 323 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 PRR23D1E9PI22 279 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 KCNK1O00180 336 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 TRIM13O60858 407 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ENTPD5O75356 428 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 LDOC1O95751 146 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 GYPCP04921 128 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ITGAVP06756 1048 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 LTA4HP09960 611 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 PRR23D2P0DMB1 279 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 ATP5A1P25705 553 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 CSTF2P33240 577 aaKnown RBP eCLIP4.28□□□□□ -1.72
VCAN-209ENST00000513016 ABRQ12979 859 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 RFTN1Q14699 578 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 ITPRIPL2Q3MIP1 535 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 FOXR2Q6PJQ5 311 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CRTC3Q6UUV7 619 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 LAYNQ6UX15 382 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 TMC8Q8IU68 726 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ARL14EPQ8N8R7 260 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 COL26A1Q96A83 441 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms