RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ZW10O43264 779 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 RNASEH1O60930 286 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 OR5F1O95221 314 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 OR56A5P0C7T3 313 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 DGKAP23743 735 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 GPR1P46091 355 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 AMPD2Q01433 879 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 GRB14Q14449 540 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 EMC2Q15006 297 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 ZIK1Q3SY52 487 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 FAM76BQ5HYJ3 339 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 NCCRP1Q6ZVX7 275 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 SPATA19Q7Z5L4 167 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 CMTR2Q8IYT2 770 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 INO80EQ8NBZ0 244 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 OR2T34Q8NGX1 318 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 OR2T3Q8NH03 318 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 DNAJB14Q8TBM8 379 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 HTR3CQ8WXA8 447 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 CENPNQ96H22 339 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 SPATA33Q96N06 139 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 FAM126AQ9BYI3 521 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 SCUBE2Q9NQ36 999 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 RBMX2Q9Y388 322 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 GRIA1P42261 906 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 RAB5BP61020 215 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 RBBP4Q09028 425 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 TBX2Q13207 712 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 ARHGAP15Q53QZ3 475 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 HLA-DQA1Q5Y7H0 255 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF613Q6PF04 617 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 PAMR1Q6UXH9 720 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 ILDR2Q71H61 639 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 EEPD1Q7L9B9 569 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 NT5DC3Q86UY8 548 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 PHF21BQ96EK2 531 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 PHB2Q99623 299 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 LYVE1Q9Y5Y7 322 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 SYNMO15061 1565 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 CYP3A7-CYP3A51PA0A087WV96 503 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 NCF1BA6NI72 391 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 NCF1CA8MVU1 366 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 CCRL2O00421 344 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 SUV39H1O43463 412 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 C8BP07358 591 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 NCF1P14598 390 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 FGFR3P22607 806 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 CYP3A7P24462 503 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 CDC25CP30307 473 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 NPTX2P47972 431 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 GPSM1Q86YR5 675 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 RFKQ969G6 155 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF512Q96ME7 567 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 KBTBD4Q9NVX7 518 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ADGRL2O95490 1459 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ILVBLA1L0T0 632 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 PDCD5O14737 125 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 CSPG5O95196 566 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 MYCP01106 439 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 PRH1P02810 166 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 RPA3P35244 121 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 CBLBQ13191 982 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 LSM12Q3MHD2 195 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 FNBP1LQ5T0N5 605 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 TDRD10Q5VZ19 366 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 LAPTM4BQ86VI4 370 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 PGAM4Q8N0Y7 254 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 TMEM159Q96B96 161 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 HTATIP2Q9BUP3 242 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 RUSC1Q9BVN2 902 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 OGDHLQ9ULD0 1010 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 QSOX1O00391 747 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 MID1O15344 667 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ITGAVP06756 1048 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 PLEKP08567 350 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 SEPHS1P49903 392 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ATP6V0D1P61421 351 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 BST1Q10588 318 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 TMEM132BQ14DG7 1078 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 MFSD5Q6N075 450 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 HPS6Q86YV9 775 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 CLYBLQ8N0X4 340 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ABRAQ8N0Z2 381 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 LPAR1Q92633 364 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF512BQ96KM6 892 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 MGME1Q9BQP7 344 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 GRHL1Q9NZI5 618 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 PTBP2Q9UKA9 531 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 OR2AT4A6NND4 320 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 PDPK1O15530 556 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ANGPTL1O95841 491 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 JCHAINP01591 159 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 C9P02748 559 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 DNTTP04053 509 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 RRM1P23921 792 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 STOMP27105 288 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF829Q3KNS6 432 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 PLEKHG6Q3KR16 790 aa11.31□□□□□ -0.6
LIMCH1-217ENST00000512946 LMBRD2Q68DH5 695 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms