RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 CEP44Q9C0F1 390 aa11.77□□□□□ -0.53
RNF4-216ENST00000511859 CDH19Q9H159 772 aa11.77□□□□□ -0.53
RNF4-216ENST00000511859 SIRPGQ9P1W8 387 aa11.77□□□□□ -0.53
RNF4-216ENST00000511859 VPS51Q9UID3 782 aa11.77□□□□□ -0.53
RNF4-216ENST00000511859 PCDHA7Q9UN72 937 aa11.77□□□□□ -0.53
RNF4-216ENST00000511859 GPR34Q9UPC5 381 aa11.77□□□□□ -0.53
RNF4-216ENST00000511859 PLAAQ9Y263 795 aa11.77□□□□□ -0.53
RNF4-216ENST00000511859 PCDHB4Q9Y5E5 795 aa11.77□□□□□ -0.53
RNF4-216ENST00000511859 LRBAP50851 2863 aa11.77□□□□□ -0.53
RNF4-216ENST00000511859 C2CD3Q4AC94 2353 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 TMEM110-MUSTN1A8MSY1 372 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 NEMP1O14524 444 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 CETN3O15182 167 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 ZNF821O75541 412 aaPredicted RBP11.76□□□□□ -0.53
RNF4-216ENST00000511859 RHOCP08134 193 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 GLB1P16278 677 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 BRD2P25440 801 aaKnown RBP11.76□□□□□ -0.53
RNF4-216ENST00000511859 ME1P48163 572 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 PEX5P50542 639 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 HK3P52790 923 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 CDK17Q00537 523 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 CARD16Q5EG05 197 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 TCERG1LQ5VWI1 586 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 C22orf39Q6P5X5 142 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 TMEM110Q86TL2 294 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 SETD3Q86TU7 594 aaPredicted RBP11.76□□□□□ -0.53
RNF4-216ENST00000511859 CCNJLQ8IV13 435 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 IL22RA1Q8N6P7 574 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 DCAF4L2Q8NA75 395 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 PCDH19Q8TAB3 1148 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 C1QTNF7Q9BXJ2 289 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 SLC4A5Q9BY07 1137 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 TNKS2Q9H2K2 1166 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 ZNF71Q9NQZ8 489 aaPredicted RBP11.76□□□□□ -0.53
RNF4-216ENST00000511859 TMPRSS4Q9NRS4 437 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 USP25Q9UHP3 1055 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 MAPK8IP1Q9UQF2 711 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 RNF215Q9Y6U7 377 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 DOCK4Q8N1I0 1966 aa11.76□□□□□ -0.53
RNF4-216ENST00000511859 CHD5Q8TDI0 1954 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 PRRC2CQ9Y520 2896 aaKnown RBP11.75□□□□□ -0.53
RNF4-216ENST00000511859 IRAK1P51617 712 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 DNM1Q05193 864 aaKnown RBP11.75□□□□□ -0.53
RNF4-216ENST00000511859 LRMPQ12912 555 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 ZCWPW2Q504Y3 356 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 HIST2H2BCQ6DN03 193 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 RETSATQ6NUM9 610 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 SLITRK4Q8IW52 837 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 PLPP6Q8IY26 295 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 PCDH20Q8N6Y1 951 aaKnown RBP11.75□□□□□ -0.53
RNF4-216ENST00000511859 GPR156Q8NFN8 814 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 FAM204AQ9H8W3 233 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 DDIT4Q9NX09 232 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 CHMP5Q9NZZ3 219 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 HS3ST4Q9Y661 456 aa11.75□□□□□ -0.53
RNF4-216ENST00000511859 POLQO75417 2590 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 A0A0D9SEW6 157 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 C16orf96A6NNT2 1141 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 ZNF891A8MT65 544 aaPredicted RBP11.74□□□□□ -0.53
RNF4-216ENST00000511859 ENDOD1O94919 500 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 GLI1P08151 1106 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 CELA2BP08218 269 aaPredicted RBP11.74□□□□□ -0.53
RNF4-216ENST00000511859 PITX1P78337 314 aaPredicted RBP11.74□□□□□ -0.53
RNF4-216ENST00000511859 KLRB1Q12918 225 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 DCAF17Q5H9S7 520 aaPredicted RBP11.74□□□□□ -0.53
RNF4-216ENST00000511859 PHF19Q5T6S3 580 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 LINGO4Q6UY18 593 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 PARS2Q7L3T8 475 aaKnown RBP11.74□□□□□ -0.53
RNF4-216ENST00000511859 PIM3Q86V86 326 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 VPS36Q86VN1 386 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 HID1Q8IV36 788 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 Q8N9G6 341 aaPredicted RBP11.74□□□□□ -0.53
RNF4-216ENST00000511859 JPH3Q8WXH2 748 aaPredicted RBP11.74□□□□□ -0.53
RNF4-216ENST00000511859 TAAR9Q96RI9 348 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 PCDHGA3Q9Y5H0 932 aa11.74□□□□□ -0.53
RNF4-216ENST00000511859 SYNJ2BP-COX16A0A087WUM0 186 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 AGRPO00253 132 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 HGSO14964 777 aaPredicted RBP11.73□□□□□ -0.53
RNF4-216ENST00000511859 PAGE1O75459 146 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 TM7SF2O76062 418 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 CNTN5O94779 1100 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 RASGRP1O95267 797 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 LIFP15018 202 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 HTR1BP28222 390 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 UGT1A3P35503 534 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 IGFALSP35858 605 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 DNA2P51530 1060 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 CCNHP51946 323 aaPredicted RBP11.73□□□□□ -0.53
RNF4-216ENST00000511859 ARHGEF7Q14155 803 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 MEA1Q16626 185 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 ZNF805Q5CZA5 627 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 CERCAMQ5T4B2 595 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 FHL5Q5TD97 284 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 OGFOD3Q6PK18 319 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 SPRED1Q7Z699 444 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 APOBEC4Q8WW27 367 aaKnown RBP11.73□□□□□ -0.53
RNF4-216ENST00000511859 TSACCQ96A04 125 aaPredicted RBP11.73□□□□□ -0.53
RNF4-216ENST00000511859 ABHD17AQ96GS6 310 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 SLC45A3Q96JT2 553 aa11.73□□□□□ -0.53
RNF4-216ENST00000511859 NT5C1BQ96P26 610 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms