RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SERPINH1P50454 418 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 WNT3AP56704 352 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 YBEYP58557 167 aaPredicted RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 AP2B1P63010 937 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 IRF9Q00978 393 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 RING1Q06587 406 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 SMAD1Q15797 465 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 CTXN3Q4LDR2 81 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 KHDC1Q4VXA5 237 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 CLLU1OSQ5K130 101 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 MAP3K21Q5TCX8 1036 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 PIK3R6Q5UE93 754 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 SEL1L3Q68CR1 1132 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 LRRC8EQ6NSJ5 796 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 KLC3Q6P597 504 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 KDELC1Q6UW63 502 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ACAD11Q709F0 780 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 SCG3Q8WXD2 468 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 PEX13Q92968 403 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 FBXO32Q969P5 355 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 SPATA17Q96L03 361 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 MRGPRX2Q96LB1 330 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 CEP295NLQ96MC4 621 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 GATA5Q9BWX5 397 aaPredicted RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 MRPL46Q9H2W6 279 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 COG4Q9H9E3 785 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ATP13A1Q9HD20 1204 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ZNF358Q9NW07 568 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 CEP290O15078 2479 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 H7C4K7 107 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 NVLO15381 856 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 AHSGP02765 367 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 RPL14P50914 215 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 ACTR3P61158 418 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 IL10RBQ08334 325 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 SEPT6Q14141 434 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 BTG3Q14201 252 aaPredicted RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 MS4A13Q5J8X5 152 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 C1orf146Q5VVC0 180 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ZNF470Q6ECI4 717 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 NEPROQ6NW34 567 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ESRP1Q6NXG1 681 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 AAGABQ6PD74 315 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 PIWIL4Q7Z3Z4 852 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 MAVSQ7Z434 540 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ZNF280BQ86YH2 543 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ZNF683Q8IZ20 524 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 TEX26Q8N6G2 289 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ZNF781Q8N8C0 355 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 DNAJC9Q8WXX5 260 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 PAWRQ96IZ0 340 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 FAR2Q96K12 515 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ZNF570Q96NI8 536 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 MRPL57Q9BQC6 102 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 THTPAQ9BU02 230 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 CCDC28BQ9BUN5 200 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 PPP1R12CQ9BZL4 782 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 TCF7L2Q9NQB0 619 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 NDE1Q9NXR1 346 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 NCKIPSDQ9NZQ3 722 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 MPP6Q9NZW5 540 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 GMIPQ9P107 970 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 FBXO5Q9UKT4 447 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 CORO1CQ9ULV4 474 aaPredicted RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 ARHGAP26Q9UNA1 814 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 RUVBL2Q9Y230 463 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 SLC7A4O43246 635 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 RAMP2O60895 175 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 OR4Q2P0C623 313 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 CPB1P15086 417 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 NCF2P19878 526 aaPredicted RBP12.1□□□□□ -0.47
NUP54-202ENST00000502850 SLC26A3P40879 764 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 SLC1A2P43004 574 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 GRIA4P48058 902 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 NUMBP49757 651 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 DNAJB13P59910 316 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 EFEMP1Q12805 493 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 DLG2Q15700 870 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 SLC14A2Q15849 920 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 FAM83EQ2M2I3 478 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 AGAP9Q5VTM2 703 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 LRRC74BQ6ZQY2 392 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 NECAB2Q7Z6G3 386 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 C14orf80Q86SX3 495 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 SLC41A1Q8IVJ1 513 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 BBS5Q8N3I7 341 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 KCNV2Q8TDN2 545 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 ELMO2Q96JJ3 720 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 CNDP1Q96KN2 507 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 ZNF599Q96NL3 588 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 RTKNQ9BST9 563 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 MRPL9Q9BYD2 267 aaKnown RBP12.1□□□□□ -0.47
NUP54-202ENST00000502850 TRPC7Q9HCX4 862 aa12.1□□□□□ -0.47
NUP54-202ENST00000502850 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.1□□□□□ -0.47
NUP54-202ENST00000502850 COLQQ9Y215 455 aaPredicted RBP12.1□□□□□ -0.47
NUP54-202ENST00000502850 PRG3Q9Y2Y8 225 aaPredicted RBP12.1□□□□□ -0.47
NUP54-202ENST00000502850 VWA8A3KMH1 1905 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 ALPK3Q96L96 1907 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 E2F8A0AVK6 867 aa12.09□□□□□ -0.47
NUP54-202ENST00000502850 TRPC5OSA6NMA1 111 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms