RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 STX3Q13277 289 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 MPP2Q14168 576 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 RFTN1Q14699 578 aaPredicted RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 LBRQ14739 615 aaKnown RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 TBCCQ15814 346 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 TSNAXIP1Q2TAA8 658 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 FAM133BQ5BKY9 247 aaKnown RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 SNX30Q5VWJ9 437 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 AFMIDQ63HM1 303 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 KIAA0930Q6ICG6 404 aaPredicted RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 PKN3Q6P5Z2 889 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 TRMT10BQ6PF06 316 aaKnown RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 FBXO46Q6PJ61 603 aaPredicted RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 PRSS55Q6UWB4 352 aaPredicted RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 ZNF783Q6ZMS7 281 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 KIAA0408Q6ZU52 694 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 CCDC149Q6ZUS6 474 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 CHST9Q7L1S5 443 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 OTOAQ7RTW8 1153 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 TFAP2DQ7Z6R9 452 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 LGI2Q8N0V4 545 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 ARHGAP24Q8N264 748 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 AGGF1Q8N302 714 aaeCLIP7.01□□□□□ -1.29
USP39-219ENST00000496047 AFAP1L2Q8N4X5 818 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 NETO2Q8NC67 525 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 ZNF461Q8TAF7 563 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 SCG3Q8WXD2 468 aaKnown RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 ARNTL2Q8WYA1 636 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 PTPRN2Q92932 1015 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 PEX13Q92968 403 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 USP13Q92995 863 aaPredicted RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 TRMT2BQ96GJ1 504 aaKnown RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 VPS39Q96JC1 886 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 YME1L1Q96TA2 773 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 MLPHQ9BV36 600 aaPredicted RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 KIFC1Q9BW19 673 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 CINPQ9BW66 212 aaPredicted RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 RHOJQ9H4E5 214 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 C11orf49Q9H6J7 331 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 CYP4F11Q9HBI6 524 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 NPHS2Q9NP85 383 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 NT5MQ9NPB1 228 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 MRPL17Q9NRX2 175 aaKnown RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 IARS2Q9NSE4 1012 aaKnown RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 OSER1Q9NX31 292 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 UBP1Q9NZI7 540 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 GMPR2Q9P2T1 348 aaKnown RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 PRKAG3Q9UGI9 489 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 PRKAG2Q9UGJ0 569 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 SEPT3Q9UH03 358 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 ZFP69BQ9UJL9 534 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 CORO1CQ9ULV4 474 aaPredicted RBP7.01□□□□□ -1.29
USP39-219ENST00000496047 SLC12A4Q9UP95 1085 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 NEU3Q9UQ49 428 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 ZNF510Q9Y2H8 683 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 YIPF1Q9Y548 306 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 ASB3Q9Y575 518 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 PCDHB12Q9Y5F1 795 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 NR2E3Q9Y5X4 410 aa7.01□□□□□ -1.29
USP39-219ENST00000496047 A0A087X1B8 175 aa7□□□□□ -1.29
USP39-219ENST00000496047 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7□□□□□ -1.29
USP39-219ENST00000496047 GOLGA8QA0A0J9YX86 632 aa7□□□□□ -1.29
USP39-219ENST00000496047 GOLGA8OA6NCC3 632 aa7□□□□□ -1.29
USP39-219ENST00000496047 GOLGA8NF8WBI6 632 aa7□□□□□ -1.29
USP39-219ENST00000496047 I6L893 689 aaPredicted RBP7□□□□□ -1.29
USP39-219ENST00000496047 CCDC22O60826 627 aa7□□□□□ -1.29
USP39-219ENST00000496047 UBOX5O94941 541 aa7□□□□□ -1.29
USP39-219ENST00000496047 PAPSS2O95340 614 aaPredicted RBP7□□□□□ -1.29
USP39-219ENST00000496047 LRG1P02750 347 aa7□□□□□ -1.29
USP39-219ENST00000496047 SERPINE1P05121 402 aa7□□□□□ -1.29
USP39-219ENST00000496047 BPGMP07738 259 aa7□□□□□ -1.29
USP39-219ENST00000496047 MBL2P11226 248 aaPredicted RBP7□□□□□ -1.29
USP39-219ENST00000496047 COL6A2P12110 1019 aa7□□□□□ -1.29
USP39-219ENST00000496047 EZRP15311 586 aaKnown RBP7□□□□□ -1.29
USP39-219ENST00000496047 RAG1P15918 1043 aa7□□□□□ -1.29
USP39-219ENST00000496047 ATF6P18850 670 aa7□□□□□ -1.29
USP39-219ENST00000496047 BGNP21810 368 aa7□□□□□ -1.29
USP39-219ENST00000496047 CRABP2P29373 138 aa7□□□□□ -1.29
USP39-219ENST00000496047 ETV4P43268 484 aa7□□□□□ -1.29
USP39-219ENST00000496047 CD151P48509 253 aa7□□□□□ -1.29
USP39-219ENST00000496047 CLCN5P51795 746 aa7□□□□□ -1.29
USP39-219ENST00000496047 SH3BP2P78314 561 aa7□□□□□ -1.29
USP39-219ENST00000496047 PRAMEP78395 509 aa7□□□□□ -1.29
USP39-219ENST00000496047 TNK2Q07912 1038 aa7□□□□□ -1.29
USP39-219ENST00000496047 ZNF177Q13360 481 aaPredicted RBP7□□□□□ -1.29
USP39-219ENST00000496047 SERINC3Q13530 473 aa7□□□□□ -1.29
USP39-219ENST00000496047 SLC12A1Q13621 1099 aa7□□□□□ -1.29
USP39-219ENST00000496047 POU6F1Q14863 301 aa7□□□□□ -1.29
USP39-219ENST00000496047 CHI3L2Q15782 390 aa7□□□□□ -1.29
USP39-219ENST00000496047 PCSK7Q16549 785 aa7□□□□□ -1.29
USP39-219ENST00000496047 CFAP157Q5JU67 520 aa7□□□□□ -1.29
USP39-219ENST00000496047 CERCAMQ5T4B2 595 aa7□□□□□ -1.29
USP39-219ENST00000496047 TEDDM1Q5T9Z0 273 aa7□□□□□ -1.29
USP39-219ENST00000496047 N4BP2L1Q5TBK1 243 aaPredicted RBP7□□□□□ -1.29
USP39-219ENST00000496047 IL31Q6EBC2 164 aa7□□□□□ -1.29
USP39-219ENST00000496047 FBXL22Q6P050 247 aa7□□□□□ -1.29
USP39-219ENST00000496047 KLC3Q6P597 504 aa7□□□□□ -1.29
USP39-219ENST00000496047 SETD3Q86TU7 594 aaPredicted RBP7□□□□□ -1.29
USP39-219ENST00000496047 TP53INP2Q8IXH6 220 aa7□□□□□ -1.29
USP39-219ENST00000496047 SLC39A11Q8N1S5 342 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms