RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ZNF677Q86XU0 584 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 RBFAQ8N0V3 343 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 LSMEM2Q8N112 164 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 RYBPQ8N488 228 aaPredicted RBP12.59□□□□□ -0.39
CPSF3-204ENST00000489403 LSM14AQ8ND56 463 aaKnown RBP12.59□□□□□ -0.39
CPSF3-204ENST00000489403 DENND6BQ8NEG7 585 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 GPT2Q8TD30 523 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 LMX1AQ8TE12 382 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 ASB12Q8WXK4 309 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 TBC1D31Q96DN5 1066 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 C11orf70Q9BRQ4 267 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 ABCG4Q9H172 646 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 POLR1BQ9H9Y6 1135 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 ASCL3Q9NQ33 180 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 IPO11Q9UI26 975 aaKnown RBP12.59□□□□□ -0.39
CPSF3-204ENST00000489403 DACH1Q9UI36 760 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 SALL4Q9UJQ4 1053 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 PNMA8BQ9ULN7 279 aaPredicted RBP12.59□□□□□ -0.39
CPSF3-204ENST00000489403 A0A1W2PNU3 283 aaPredicted RBP12.58□□□□□ -0.4
CPSF3-204ENST00000489403 KRIT1O00522 736 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 NEMP1O14524 444 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 RAMP2O60895 175 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 UGT2B4P06133 528 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 CHRNB2P17787 502 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 SDC4P31431 198 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 LSSP48449 732 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 KLK7P49862 253 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 HDAC4P56524 1084 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 GEMIN4P57678 1058 aaKnown RBP12.58□□□□□ -0.4
CPSF3-204ENST00000489403 ERVPABLB-1P60509 514 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 SNRPD1P62314 119 aaKnown RBP12.58□□□□□ -0.4
CPSF3-204ENST00000489403 CDR2Q01850 454 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 ISXQ2M1V0 245 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 TCP11X2Q5H9J9 407 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 LRRC73Q5JTD7 316 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 ATXN7L2Q5T6C5 722 aaPredicted RBP12.58□□□□□ -0.4
CPSF3-204ENST00000489403 STRADAQ7RTN6 431 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 EFL1Q7Z2Z2 1120 aaKnown RBP12.58□□□□□ -0.4
CPSF3-204ENST00000489403 CCDC185Q8N715 623 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 SLC30A5Q8TAD4 765 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 CENPTQ96BT3 561 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 KLHL32Q96NJ5 620 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 OSBPL1AQ9BXW6 950 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 MAGEH1Q9H213 219 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 TCEAL2Q9H3H9 227 aaPredicted RBP12.58□□□□□ -0.4
CPSF3-204ENST00000489403 RETREG1Q9H6L5 497 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 TAB2Q9NYJ8 693 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 APOBEC3BQ9UH17 382 aaKnown RBP12.58□□□□□ -0.4
CPSF3-204ENST00000489403 SATB2Q9UPW6 733 aa12.58□□□□□ -0.4
CPSF3-204ENST00000489403 CPED1A4D0V7 1026 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 TPP1O14773 563 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 AREL1O15033 823 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 TMCC1O94876 653 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 POP4O95707 220 aaKnown RBP12.57□□□□□ -0.4
CPSF3-204ENST00000489403 PLEKP08567 350 aaPredicted RBP12.57□□□□□ -0.4
CPSF3-204ENST00000489403 EEF1GP26641 437 aaKnown RBP12.57□□□□□ -0.4
CPSF3-204ENST00000489403 PTPN9P43378 593 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 GSCP56915 257 aaPredicted RBP12.57□□□□□ -0.4
CPSF3-204ENST00000489403 TMPRSS3P57727 454 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 PTP4A2Q12974 167 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 MYLK3Q32MK0 819 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 C3orf38Q5JPI3 329 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 PERM1Q5SV97 790 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 BROXQ5VW32 411 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 IGF2-ASQ6U949 168 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 CRTC1Q6UUV9 634 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 PHACTR4Q8IZ21 702 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 ZNF843Q8N446 348 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 FAM172AQ8WUF8 416 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 BTN2A2Q8WVV5 523 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 CENPIQ92674 756 aaPredicted RBP12.57□□□□□ -0.4
CPSF3-204ENST00000489403 ARHGEF26Q96DR7 871 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 IL12RB2Q99665 862 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 LRRC61Q9BV99 259 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 BOCQ9BWV1 1114 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 CPNE5Q9HCH3 593 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 NCKIPSDQ9NZQ3 722 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 SPASTQ9UBP0 616 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 HPCAL4Q9UM19 191 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 ENTPD2Q9Y5L3 495 aa12.57□□□□□ -0.4
CPSF3-204ENST00000489403 ATMQ13315 3056 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 LRRK1Q38SD2 2015 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 MGAQ8IWI9 3026 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 ERVH48-1M5A8F1 160 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 RIOK3O14730 519 aaKnown RBP12.56□□□□□ -0.4
CPSF3-204ENST00000489403 MUSKO15146 869 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 EPHB6O15197 1021 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 CASC3O15234 703 aaKnown RBP12.56□□□□□ -0.4
CPSF3-204ENST00000489403 BUB1O43683 1085 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 KDELR3O43731 214 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 MMP20O60882 483 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 GCATO75600 419 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 ZIC2O95409 532 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-204ENST00000489403 UNGP13051 313 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-204ENST00000489403 ITIH2P19823 946 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 SOX5P35711 763 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 THOP1P52888 689 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 JAM2P57087 298 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 POLR2FP61218 127 aaKnown RBP12.56□□□□□ -0.4
CPSF3-204ENST00000489403 C1orf61Q13536 156 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms