RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 ZNF449Q6P9G9 518 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 ADGRD1Q6QNK2 874 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 ZNF771Q7L3S4 317 aaPredicted RBP12.89□□□□□ -0.35
NELFE-209ENST00000488426 CCDC117Q8IWD4 279 aaPredicted RBP12.89□□□□□ -0.35
NELFE-209ENST00000488426 BBS5Q8N3I7 341 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 SPATA22Q8NHS9 363 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 TMA16Q96EY4 203 aaKnown RBP12.89□□□□□ -0.35
NELFE-209ENST00000488426 TBL1YQ9BQ87 522 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 ACE2Q9BYF1 805 aaPredicted RBP12.89□□□□□ -0.35
NELFE-209ENST00000488426 IL22Q9GZX6 179 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 TASP1Q9H6P5 420 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 YY1AP1Q9H869 796 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 SYBUQ9NX95 663 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 UBP1Q9NZI7 540 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 SENP1Q9P0U3 644 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 ARIH1Q9Y4X5 557 aaPredicted RBP12.89□□□□□ -0.35
NELFE-209ENST00000488426 A0A0D9SEW6 157 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 E2F8A0AVK6 867 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 MAGEB16A2A368 324 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 LEFTY2O00292 366 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 SHOX2O60902 331 aaPredicted RBP12.89□□□□□ -0.35
NELFE-209ENST00000488426 TBL1XO60907 577 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 USP12O75317 370 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 ALDH1A2O94788 518 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 ADRA1AP35348 466 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 ATP1A2P50993 1020 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 FRG1Q14331 258 aaKnown RBP12.89□□□□□ -0.35
NELFE-209ENST00000488426 ZNF235Q14590 738 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 EFTUD2Q15029 972 aaKnown RBP eCLIP12.89□□□□□ -0.355e-7■■■■■ 36.5
NELFE-209ENST00000488426 SPANXN3Q5MJ09 141 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 MPP7Q5T2T1 576 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 STXBP5Q5T5C0 1151 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 CXorf57Q6NSI4 855 aaKnown RBP12.89□□□□□ -0.35
NELFE-209ENST00000488426 EXOC3L1Q86VI1 746 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 CMTM8Q8IZV2 173 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 CYP4X1Q8N118 509 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 CNPY4Q8N129 248 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 OR7D4Q8NG98 312 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 OR52K2Q8NGK3 314 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 SLC44A1Q8WWI5 657 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 TTC17Q96AE7 1141 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 CAPS2Q9BXY5 557 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 TBK1Q9UHD2 729 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 FBXL21Q9UKT6 434 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 IKBKGQ9Y6K9 419 aa12.89□□□□□ -0.35
NELFE-209ENST00000488426 CFAP54Q96N23 3096 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 F5P12259 2224 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 MIA3Q5JRA6 1907 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 FAM159BA6NKW6 160 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 ZNF197O14709 1029 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 LUC7L3O95232 432 aaKnown RBP12.88□□□□□ -0.35
NELFE-209ENST00000488426 MT-CYBP00156 380 aaPredicted RBP12.88□□□□□ -0.35
NELFE-209ENST00000488426 POLBP06746 335 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 SRFP11831 508 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 FCARP24071 287 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 AVPR1AP37288 418 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 NAB1Q13506 487 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 OLIG2Q13516 323 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 CRYMQ14894 314 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 TEAD2Q15562 447 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 SLC14A2Q15849 920 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 MPPE1Q53F39 396 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 ALG1LQ6GMV1 187 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 KDELC1Q6UW63 502 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 PRPF39Q86UA1 669 aaKnown RBP12.88□□□□□ -0.35
NELFE-209ENST00000488426 LRRC6Q86X45 466 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 IPMKQ8NFU5 416 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 DCAKDQ8WVC6 231 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 TADA1Q96BN2 335 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 SPON2Q9BUD6 331 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 FICDQ9BVA6 458 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 FSD1LQ9BXM9 530 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 POLR1EQ9GZS1 481 aaKnown RBP12.88□□□□□ -0.35
NELFE-209ENST00000488426 ATP13A1Q9HD20 1204 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 FAM86C1Q9NVL1 165 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 MOCS1Q9NZB8 636 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 UBA2Q9UBT2 640 aaPredicted RBP12.88□□□□□ -0.35
NELFE-209ENST00000488426 SEPT3Q9UH03 358 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 ZNF180Q9UJW8 692 aa12.88□□□□□ -0.35
NELFE-209ENST00000488426 ZFHX2Q9C0A1 2572 aaPredicted RBP12.88□□□□□ -0.35
NELFE-209ENST00000488426 H0Y626 953 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 H0Y858 1186 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 INHBAP08476 426 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 MDH1P40925 334 aaKnown RBP12.87□□□□□ -0.35
NELFE-209ENST00000488426 CRADDP78560 199 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 ITKQ08881 620 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 FAM78AQ5JUQ0 283 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 RNF219Q5W0B1 726 aaPredicted RBP12.87□□□□□ -0.35
NELFE-209ENST00000488426 ASTLQ6HA08 431 aaPredicted RBP12.87□□□□□ -0.35
NELFE-209ENST00000488426 RANBP10Q6VN20 620 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 TMEM135Q86UB9 458 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 TRABD2AQ86V40 505 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 SLC26A11Q86WA9 606 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 BBS7Q8IWZ6 715 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 CARNMT1Q8N4J0 409 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 SH3RF2Q8TEC5 729 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 MRGPRX2Q96LB1 330 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 MUC3BQ9H195 1237 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 MFSD1Q9H3U5 465 aa12.87□□□□□ -0.35
NELFE-209ENST00000488426 ARNT2Q9HBZ2 717 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms