RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 AFTPHQ6ULP2 937 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 RBM44Q6ZP01 1051 aaKnown RBP16.59■□□□□ 0.25
COL7A1-210ENST00000487017 ARRDC4Q8NCT1 418 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 AP4B1Q9Y6B7 739 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 PIPSLA2A3N6 862 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 GSC2O15499 205 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 AKR1A1P14550 325 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 MATKP42679 507 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 JAM2P57087 298 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 C16orf59Q7L2K0 433 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 KRT77Q7Z794 578 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 SELENOMQ8WWX9 145 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 PCDH18Q9HCL0 1135 aa16.59■□□□□ 0.25
COL7A1-210ENST00000487017 EFCAB10A6NFE3 127 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 TIMM50Q3ZCQ8 353 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 ATAD3BQ5T9A4 648 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 CLNKQ7Z7G1 428 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 ENKURQ8TC29 256 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 COPS5Q92905 334 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 NACC2Q96BF6 587 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 SPRTNQ9H040 489 aaPredicted RBP16.58■□□□□ 0.25
COL7A1-210ENST00000487017 IKZF4Q9H2S9 585 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 ARMC7Q9H6L4 198 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 EFR3BQ9Y2G0 817 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 PLLPQ9Y342 182 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 ANXA5P08758 320 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 PTPN3P26045 913 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 BNIP1Q12981 228 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 PROX1Q92786 737 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 TCF12Q99081 682 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 GLIS2Q9BZE0 524 aaPredicted RBP16.58■□□□□ 0.25
COL7A1-210ENST00000487017 TTYH3Q9C0H2 523 aa16.58■□□□□ 0.25
COL7A1-210ENST00000487017 ERCC2P18074 760 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 NUP62P37198 522 aaPredicted RBP16.58■□□□□ 0.24
COL7A1-210ENST00000487017 PLD1Q13393 1074 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 GSTCDQ8NEC7 633 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 BPIFB6Q8NFQ5 453 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 NRCAMQ92823 1304 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 HGFP14210 728 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 MMP8P22894 467 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 CRHR1P34998 444 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 PCBP1Q15365 356 aaKnown RBP eCLIP16.58■□□□□ 0.24
COL7A1-210ENST00000487017 ZIK1Q3SY52 487 aaPredicted RBP16.58■□□□□ 0.24
COL7A1-210ENST00000487017 ZNF549Q6P9A3 640 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 OR7A2PQ8NGA2 310 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 MAGEC3Q8TD91 643 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 PPP3R2Q96LZ3 170 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 TMEM109Q9BVC6 243 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 SNX6Q9UNH7 406 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 C9orf131Q5VYM1 1079 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 RSL24D1Q9UHA3 163 aaKnown RBP16.58■□□□□ 0.24
COL7A1-210ENST00000487017 GNPTGQ9UJJ9 305 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 SALL4Q9UJQ4 1053 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 C3orf18Q9UK00 162 aa16.58■□□□□ 0.24
COL7A1-210ENST00000487017 BUD23O43709 281 aaKnown RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 CABYRO75952 493 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 TSPAN19P0C672 248 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 TUFMP49411 452 aaKnown RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 SCNN1GP51170 649 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 RGS21Q2M5E4 152 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 RAP1GAP2Q684P5 730 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 ECHDC2Q86YB7 292 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 SFRP1Q8N474 314 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 ZYG11BQ9C0D3 744 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 HES2Q9Y543 173 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 TRIM43BA6NCK2 446 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 TRAFD1O14545 582 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 PAICSP22234 425 aaKnown RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 CSNK2BP67870 215 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 SFSWAPQ12872 951 aaKnown RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 PPP1R26Q5T8A7 1209 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 ZNF57Q68EA5 555 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 FLCNQ8NFG4 579 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 VPS45Q9NRW7 570 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 BTRCQ9Y297 605 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 HBS1LQ9Y450 684 aaKnown RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 ABLIM1O14639 778 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 PAPSS1O43252 624 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 PPP1R11O60927 126 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 UQCRBP14927 111 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 TTPAP49638 278 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 MRPS5P82675 430 aaKnown RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 CTBP1Q13363 440 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 MAPKAPK3Q16644 382 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 FSCN1Q16658 493 aaKnown RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 C12orf29Q8N999 325 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 WDR60Q8WVS4 1066 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 CENPIQ92674 756 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 YME1L1Q96TA2 773 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 POLR1BQ9H9Y6 1135 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 CNGB3Q9NQW8 809 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 RPS6KA6Q9UK32 745 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 CHKBQ9Y259 395 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 YDJCA8MPS7 323 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 A8MUI8 341 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 HNRNPLP14866 589 aaKnown RBP eCLIP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 CLK2P49760 499 aaKnown RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 USP4Q13107 963 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 SLC1A5Q15758 541 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 LLGL2Q6P1M3 1020 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms