RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CTSOP43234 321 aaPredicted RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 MAPK8P45983 427 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 FNTAP49354 379 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 NOVA1P51513 510 aaKnown RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 AFF3P51826 1226 aaKnown RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 SHC2P98077 582 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 SLC20A2Q08357 652 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 CCDC15Q0P6D6 951 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 MMRN1Q13201 1228 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 TEAD4Q15561 434 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 GLE1Q53GS7 698 aaKnown RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 CCDC70Q6NSX1 233 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 ADAT2Q7Z6V5 191 aaKnown RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 FAM124AQ86V42 546 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 CIR1Q86X95 450 aaPredicted RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 PYROXD2Q8N2H3 581 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 MINDY1Q8N5J2 469 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 PRELID2Q8N945 189 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 DCAF4L2Q8NA75 395 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 LRRN4CLQ8ND94 238 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 UBXN4Q92575 508 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 FAM131CQ96AQ9 280 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 RPL10LQ96L21 214 aaKnown RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 CCDC114Q96M63 670 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 OMDQ99983 421 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 ZYG11BQ9C0D3 744 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 MUC3BQ9H195 1237 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 LRRC19Q9H756 370 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 TMPRSS4Q9NRS4 437 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 CWC15Q9P013 229 aaKnown RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 OR12D3Q9UGF7 316 aa17.33■□□□□ 0.36
VIM-205ENST00000485947 FARP1Q9Y4F1 1045 aaPredicted RBP17.33■□□□□ 0.36
VIM-205ENST00000485947 CEP295Q9C0D2 2601 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 E9PAM4 449 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 CTIFO43310 598 aaKnown RBP17.32■□□□□ 0.36
VIM-205ENST00000485947 CREB3O43889 395 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 RHOCP08134 193 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 NUDT1P36639 197 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 GRIA4P48058 902 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 TPI1P60174 286 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 CCNG2Q16589 344 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 UAP1L1Q3KQV9 507 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 TEX35Q5T0J7 233 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 N4BP2L1Q5TBK1 243 aaPredicted RBP17.32■□□□□ 0.36
VIM-205ENST00000485947 DRICH1Q6PGQ1 229 aaPredicted RBP17.32■□□□□ 0.36
VIM-205ENST00000485947 RFX8Q6ZV50 586 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 PIP4P1Q86T03 277 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 CACUL1Q86Y37 369 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 SH2D3CQ8N5H7 860 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 OR2T34Q8NGX1 318 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 PCDH19Q8TAB3 1148 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 GANCQ8TET4 914 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 OR8D1Q8WZ84 308 aa17.32■□□□□ 0.36
VIM-205ENST00000485947 GTPBP2Q9BX10 602 aaKnown RBP17.32■□□□□ 0.36
VIM-205ENST00000485947 C6orf106Q9H6K1 298 aaPredicted RBP17.32■□□□□ 0.36
VIM-205ENST00000485947 EIF2B4Q9UI10 523 aaKnown RBP17.32■□□□□ 0.36
VIM-205ENST00000485947 C10orf142B7Z368 130 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 MCF2LO15068 1137 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 MID1O15344 667 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 DAPK3O43293 454 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 GJB3O75712 270 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 CER1O95813 267 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 MAOBP27338 520 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 PMLP29590 882 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 OR1E1P30953 314 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 CCR5P51681 352 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 ADCY2Q08462 1091 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 DPYSQ14117 519 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 DHX34Q14147 1143 aaKnown RBP17.31■□□□□ 0.36
VIM-205ENST00000485947 LLGL1Q15334 1064 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 ALFQ53S48 1182 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 MANEALQ5VSG8 457 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 KIAA0895LQ68EN5 471 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 PSAPL1Q6NUJ1 521 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 RETSATQ6NUM9 610 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 C8orf74Q6P047 294 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 BZW1Q7L1Q6 419 aaKnown RBP17.31■□□□□ 0.36
VIM-205ENST00000485947 MAATS1Q7Z4T9 603 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 MMAAQ8IVH4 418 aaKnown RBP17.31■□□□□ 0.36
VIM-205ENST00000485947 STK40Q8N2I9 435 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 ZCCHC9Q8N567 271 aaKnown RBP17.31■□□□□ 0.36
VIM-205ENST00000485947 PQLC3Q8N755 202 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 NOA1Q8NC60 698 aaKnown RBP17.31■□□□□ 0.36
VIM-205ENST00000485947 MAGOHBQ96A72 148 aaKnown RBP17.31■□□□□ 0.36
VIM-205ENST00000485947 SKA1Q96BD8 255 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 BIRC7Q96CA5 298 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 TBC1D31Q96DN5 1066 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 KRT12Q99456 494 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 MIR1-1HGQ9H1L0 117 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 MTG2Q9H4K7 406 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 ZZEF1O43149 2961 aa17.31■□□□□ 0.36
VIM-205ENST00000485947 PCDH15Q96QU1 1955 aa17.3■□□□□ 0.36
VIM-205ENST00000485947 C1QTNF3-AMACRE9PGA6 284 aa17.3■□□□□ 0.36
VIM-205ENST00000485947 FAM72CH0Y354 149 aa17.3■□□□□ 0.36
VIM-205ENST00000485947 FGF10O15520 208 aaPredicted RBP17.3■□□□□ 0.36
VIM-205ENST00000485947 DFNA5O60443 496 aa17.3■□□□□ 0.36
VIM-205ENST00000485947 RNASEH2AO75792 299 aaKnown RBP17.3■□□□□ 0.36
VIM-205ENST00000485947 CNTN5O94779 1100 aa17.3■□□□□ 0.36
VIM-205ENST00000485947 LRIG2O94898 1065 aa17.3■□□□□ 0.36
VIM-205ENST00000485947 IL1BP01584 269 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms