RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ZNF419Q96HQ0 510 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC2A13Q96QE2 648 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 MKRN2Q9H000 416 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 PDCL3Q9H2J4 239 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 SYNCQ9H7C4 482 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 FAM204AQ9H8W3 233 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 CD93Q9NPY3 652 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 ITM2CQ9NQX7 267 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 SAMSN1Q9NSI8 373 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 TMEM74BQ9NUR3 256 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 WSB2Q9NYS7 404 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 SUSD2Q9UGT4 822 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 XPO7Q9UIA9 1087 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 NFE2L3Q9Y4A8 694 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 FHOD1Q9Y613 1164 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 DOCK4Q8N1I0 1966 aa7.02□□□□□ -1.29
CCDC88A-213ENST00000476903 MEI4A8MW99 385 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 KCNU1A8MYU2 1149 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 H0Y626 953 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 CDX4O14627 284 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 DAB1O75553 588 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 LUC7L3O95232 432 aaKnown RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 MOCS3O95396 460 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 ASLP04424 464 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 ERBB2P04626 1255 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 SYPP08247 313 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 SERPINF2P08697 491 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 PNMA6AP0CW24 399 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 HLA-EP13747 358 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 UCHL3P15374 230 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 CYP11B1P15538 503 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 GNSP15586 552 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 ENGP17813 658 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 TACR2P21452 398 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 CCR1P32246 355 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 COPAP53621 1224 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 ATXN3P54252 364 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 ST8SIA6P61647 398 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC6A3Q01959 620 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 ZBTB16Q05516 673 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 GFPT1Q06210 699 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 EIF4EBP2Q13542 120 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 TAF5Q15542 800 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 PTPN20Q4JDL3 420 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 WDR45BQ5MNZ6 344 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 RABGAP1LQ5R372 815 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 RAP1GAP2Q684P5 730 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 OR6B2Q6IFH4 312 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 DPY19L2P1Q6NXN4 242 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 RBM43Q6ZSC3 357 aaKnown RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC26A9Q7LBE3 791 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 CHSY1Q86X52 802 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC41A1Q8IVJ1 513 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 DEFB106AQ8N104 65 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 CFAP52Q8N1V2 620 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 TMEM35BQ8NCS4 154 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 MSANTD4Q8NCY6 345 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 ZNF397Q8NF99 534 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 CADM4Q8NFZ8 388 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 DNAJB8Q8NHS0 232 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 GPT2Q8TD30 523 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 TTC17Q96AE7 1141 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 MYEOVQ96EZ4 313 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 TOE1Q96GM8 510 aaKnown RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 LMLNQ96KR4 655 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 NUP58Q9BVL2 599 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 PCED1AQ9H1Q7 454 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 PLCB1Q9NQ66 1216 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 PRSS16Q9NQE7 514 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 DDIT4Q9NX09 232 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 TAB2Q9NYJ8 693 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 RRN3Q9NYV6 651 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 KIAA1522Q9P206 1035 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 SUN2Q9UH99 717 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 NCOR2Q9Y618 2525 aa7.01□□□□□ -1.29
CCDC88A-213ENST00000476903 SYNJ2BP-COX16A0A087WUM0 186 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 FITM1A5D6W6 292 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 F8VZ95 297 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 GRAP2O75791 330 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 KCNK5O95279 499 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 LSM8O95777 96 aaKnown RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 DNTTP04053 509 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 SRPRAP08240 638 aaKnown RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 CDH5P33151 784 aaPredicted RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 CSKP41240 450 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 MATKP42679 507 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 MAPK8P45983 427 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 NOVA1P51513 510 aaKnown RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 PITX1P78337 314 aaPredicted RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 ECT2LQ008S8 904 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 NME3Q13232 169 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC12A1Q13621 1099 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 UAP1L1Q3KQV9 507 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 PLEKHG6Q3KR16 790 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 TTC31Q49AM3 519 aaPredicted RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 FSCBQ5H9T9 825 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 PITRM1Q5JRX3 1037 aa7□□□□□ -1.29
CCDC88A-213ENST00000476903 WIPI1Q5MNZ9 446 aaPredicted RBP7□□□□□ -1.29
CCDC88A-213ENST00000476903 FKBP15Q5T1M5 1219 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms