RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 BUB1O43683 1085 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 TMCC1O94876 653 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 UGT2B4P06133 528 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 RABIFP47224 123 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 YBEYP58557 167 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 RPL7AP62424 266 aaKnown RBP16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 DAB2P98082 770 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 E2F1Q01094 437 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 RAD51Q06609 339 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 SGCGQ13326 291 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 INO80DQ53TQ3 878 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 ATXN7L2Q5T6C5 722 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 ACAD10Q6JQN1 1059 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 ZNF354CQ86Y25 554 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 MCOLN2Q8IZK6 566 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 AOPEPQ8N6M6 819 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 DENND6BQ8NEG7 585 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 ARHGEF26Q96DR7 871 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 GDAP1L1Q96MZ0 367 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 KLF6Q99612 283 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 EPAS1Q99814 870 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 CNPY3Q9BT09 278 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 ASXL3Q9C0F0 2248 aa16.82■□□□□ 0.28
CCDC28B-204ENST00000469003 CELSR3Q9NYQ7 3312 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 SPTY2D1-AS1A0A0U1RR47 76 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 FPGTO14772 594 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 FFAR2O15552 330 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 SPINT1O43278 529 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 CREB3O43889 395 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 GIMD1P0DJR0 217 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 ALPPL2P10696 532 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 ATP1A3P13637 1013 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 DESP17661 470 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 HNRNPKP61978 463 aaKnown RBP eCLIP16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 FZD2Q14332 565 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 PPP1R2P3Q6NXS1 205 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 DCUN1D2Q6PH85 259 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 GDPD4Q6W3E5 623 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 IRF2BP2Q7Z5L9 587 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 HNRNPLLQ8WVV9 542 aaKnown RBP16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 BAP1Q92560 729 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 KLHL32Q96NJ5 620 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 TTYH3Q9C0H2 523 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 NRSN2Q9GZP1 204 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 KLC2Q9H0B6 622 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 CATSPERBQ9H7T0 1116 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 DNAJC28Q9NX36 388 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 NLGN3Q9NZ94 848 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 GGT7Q9UJ14 662 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 MYO6Q9UM54 1294 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 ITM2BQ9Y287 266 aa16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 ASH1LQ9NR48 2969 aaKnown RBP16.81■□□□□ 0.28
CCDC28B-204ENST00000469003 URB1O60287 2271 aaKnown RBP16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 A0A087WV48 116 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 NEMP2A6NFY4 417 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 RASA4BC9J798 803 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 AREL1O15033 823 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 RASA4O43374 803 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 ZIC2O95409 532 aaPredicted RBP16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 IGSF6O95976 241 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 CKMT1AP12532 417 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 TNFAIP3P21580 790 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 HTR7P34969 479 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 INSM1Q01101 510 aaPredicted RBP16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 TYRO3Q06418 890 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 SERINC3Q13530 473 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 RTP5Q14D33 572 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 PARP15Q460N3 678 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 ZNF542PQ5EBM4 170 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 PARGQ86W56 976 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 UMODL1-AS1Q8N2C9 162 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 HMCESQ96FZ2 354 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 VCPIP1Q96JH7 1222 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 SYT11Q9BT88 431 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 DUSP23Q9BVJ7 150 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 NAT10Q9H0A0 1025 aaKnown RBP16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 CAAP1Q9H8G2 361 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 CLCA2Q9UQC9 943 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 MFHAS1Q9Y4C4 1052 aa16.8■□□□□ 0.28
CCDC28B-204ENST00000469003 H3BM21 787 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 SCAMP1O15126 338 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 FGF10O15520 208 aaPredicted RBP16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 TEX33O43247 280 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 CSF2P04141 144 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 NME1P15531 152 aaKnown RBP16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 PFN3P60673 137 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 RHOAP61586 193 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 OGDHQ02218 1023 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 TMC6Q7Z403 805 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 TTC7BQ86TV6 843 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 DCBLD1Q8N8Z6 715 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 FAM181AQ8N9Y4 354 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 APOLD1Q96LR9 279 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 USP29Q9HBJ7 922 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 EVA1BQ9NVM1 165 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 DONSONQ9NYP3 566 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 TAS2R14Q9NYV8 317 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 DKK3Q9UBP4 350 aa16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 IPO11Q9UI26 975 aaKnown RBP16.79■□□□□ 0.28
CCDC28B-204ENST00000469003 AK5Q9Y6K8 562 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms