RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 GOLPH3Q9H4A6 298 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 MRPL47Q9HD33 250 aaKnown RBP4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 DMAP1Q9NPF5 467 aaPredicted RBP4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 TLR9Q9NR96 1032 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 TMEM30AQ9NV96 361 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 PARVAQ9NVD7 372 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 COX16Q9P0S2 106 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 AFF4Q9UHB7 1163 aaKnown RBP4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 DNAI1Q9UI46 699 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 INTUQ9ULD6 942 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 NENFQ9UMX5 172 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 COG5Q9UP83 839 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 LTBP2Q14767 1821 aa4.25□□□□□ -1.73
TMEM39A-204ENST00000468545 DNAH12Q6ZR08 3092 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 BRCA2P51587 3418 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 hCG_2014768A0A024R1R8 64 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 GOLGA6L9A6NEM1 432 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 EPOPA6NHQ4 379 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 SIGLEC16A6NMB1 481 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 SLC38A8A6NNN8 435 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 HHLA1C9JL84 531 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 H0Y858 1186 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 H3BNC9 293 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 MYO1FO00160 1098 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 CAPN9O14815 690 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 PAPSS1O43252 624 aaPredicted RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 SPOPO43791 374 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 ABLIM3O94929 683 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 VNN2O95498 520 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 FTCDO95954 541 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 ZBED1O96006 694 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 GLUD1P00367 558 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 PDGFRAP16234 1089 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 GPD1P21695 349 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 PSMA2P25787 234 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 YWHAQP27348 245 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 APEX1P27695 318 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RFC1P35251 1148 aaPredicted RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 GABRB2P47870 512 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 NRIP1P48552 1158 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RGS19P49795 217 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 CDKN1CP49918 316 aaPredicted RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 SLC5A3P53794 718 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 MLLT6P55198 1093 aaPredicted RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RPL7AP62424 266 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RPL10AP62906 217 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 IL13RA1P78552 427 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 MRPS5P82675 430 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 CREMQ03060 361 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 UBE3AQ05086 875 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 TWF1Q12792 350 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 SMARCB1Q12824 385 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 FAPQ12884 760 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 PLD1Q13393 1074 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 CDO1Q16878 200 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 FBLN7Q53RD9 439 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 EFHC1Q5JVL4 640 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 PPM1LQ5SGD2 360 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 DAB2IPQ5VWQ8 1189 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 KANK2Q63ZY3 851 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 TPGS2Q68CL5 300 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 PLEKHA7Q6IQ23 1121 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 SLC8B1Q6J4K2 584 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 TIGD7Q6NT04 549 aaPredicted RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 SCYL2Q6P3W7 929 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 TRMT10BQ6PF06 316 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 VSTM1Q6UX27 236 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 LHFPL2Q6ZUX7 228 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 DAAM2Q86T65 1068 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 TMEM110Q86TL2 294 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RASSF3Q86WH2 238 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RHOT2Q8IXI1 618 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RNF168Q8IYW5 571 aaPredicted RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 DEFB106AQ8N104 65 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 CARFQ8N187 725 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RNF10Q8N5U6 811 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 C12orf76Q8N812 135 aaPredicted RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 MRPL43Q8N983 215 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 CLRN3Q8NCR9 226 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 WDR48Q8TAF3 677 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 ZNF461Q8TAF7 563 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 ZSCAN18Q8TBC5 510 aaPredicted RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 C2orf15Q8WU43 125 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 SLC22A17Q8WUG5 538 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RXFP2Q8WXD0 754 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 ZCCHC14Q8WYQ9 949 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 RFFLQ8WZ73 363 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 GOLGA1Q92805 767 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 FBXO32Q969P5 355 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 PIWIL1Q96J94 861 aaKnown RBP4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 VCPIP1Q96JH7 1222 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 C8orf48Q96LL4 319 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 ALS2CR12Q96Q35 445 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 TUBGCP5Q96RT8 1024 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 PSMB7Q99436 277 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 APOL5Q9BWW9 433 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 UBXN6Q9BZV1 441 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 TLE6Q9H808 572 aa4.24□□□□□ -1.73
TMEM39A-204ENST00000468545 L2HGDHQ9H9P8 463 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms