RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 GLOD4Q9HC38 313 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 POLMQ9NP87 494 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-204ENST00000452182 PPM1HQ9ULR3 514 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.72□□□□□ -0.53
SCN9A-204ENST00000452182 GAS8O95995 478 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 PRNPP04156 253 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 ACTN2P35609 894 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 CCR3P51677 355 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 NRLP54845 237 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 MAXP61244 160 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 ZBTB16Q05516 673 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 DNTTIP2Q5QJE6 756 aaKnown RBP11.72□□□□□ -0.53
SCN9A-204ENST00000452182 NCEH1Q6PIU2 408 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 KLHDC8BQ8IXV7 354 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 STK40Q8N2I9 435 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 CAMKK1Q8N5S9 505 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 MNS1Q8NEH6 495 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 CCDC110Q8TBZ0 833 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 TADA1Q96BN2 335 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 SEMA3CQ99985 751 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 GBA3Q9H227 469 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 SCUBE2Q9NQ36 999 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 VPS45Q9NRW7 570 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 IL36AQ9UHA7 158 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 EVLQ9UI08 416 aaPredicted RBP11.72□□□□□ -0.53
SCN9A-204ENST00000452182 WASF2Q9Y6W5 498 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 ANKRD36A6QL64 1941 aa11.72□□□□□ -0.53
SCN9A-204ENST00000452182 BNIP3LO60238 219 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 GPR37L1O60883 481 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 RNASEH1O60930 286 aaKnown RBP11.71□□□□□ -0.53
SCN9A-204ENST00000452182 SOCS5O75159 536 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 ECEL1O95672 775 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 IFNB1P01574 187 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 CTSLP07711 333 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 MMP2P08253 660 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 SERPINF2P08697 491 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 NFKB1P19838 968 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 CXCL12P48061 93 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 SATB1Q01826 763 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 ITKQ08881 620 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 NIPAL4Q0D2K0 466 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 DHX34Q14147 1143 aaKnown RBP11.71□□□□□ -0.53
SCN9A-204ENST00000452182 PARP6Q2NL67 630 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 ARHGEF18Q6ZSZ5 1173 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 SYDE1Q6ZW31 735 aaPredicted RBP11.71□□□□□ -0.53
SCN9A-204ENST00000452182 GSTA5Q7RTV2 222 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 RASSF3Q86WH2 238 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 TMPRSS6Q8IU80 811 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 RYBPQ8N488 228 aaPredicted RBP11.71□□□□□ -0.53
SCN9A-204ENST00000452182 TMEM105Q8N8V8 129 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 CHST14Q8NCH0 376 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 HCAR2Q8TDS4 363 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 ZNF641Q96N77 438 aaPredicted RBP11.71□□□□□ -0.53
SCN9A-204ENST00000452182 MKRN2Q9H000 416 aaKnown RBP11.71□□□□□ -0.53
SCN9A-204ENST00000452182 ATP13A3Q9H7F0 1226 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 NOD2Q9HC29 1040 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 PCDH9Q9HC56 1237 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 C11orf16Q9NQ32 467 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 C2orf42Q9NWW7 574 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 PAK5Q9P286 719 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 RSPH14Q9UHP6 348 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 SCML1Q9UN30 329 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 NEU2Q9Y3R4 380 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 TTLL3Q9Y4R7 772 aa11.71□□□□□ -0.53
SCN9A-204ENST00000452182 A0A1W2PQ67 120 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 PRR33A8MZF0 331 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 C1QTNF3-AMACRE9PGA6 284 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 LEFTY1O75610 366 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 ANXA9O76027 345 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 ALDH1A2O94788 518 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 ADH1BP00325 375 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 SERPINA4P29622 427 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 HOXA6P31267 233 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 PTGIRP43119 386 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 RPS14P62263 151 aaKnown RBP11.71□□□□□ -0.54
SCN9A-204ENST00000452182 DSC2Q02487 901 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 BCL2L1Q07817 233 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 ARSIQ5FYB1 569 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 FAM46CQ5VWP2 391 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 ZNF776Q68DI1 518 aaPredicted RBP11.71□□□□□ -0.54
SCN9A-204ENST00000452182 PRPF39Q86UA1 669 aaKnown RBP11.71□□□□□ -0.54
SCN9A-204ENST00000452182 KLHL7Q8IXQ5 586 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 CEP112Q8N8E3 955 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 GLIS1Q8NBF1 620 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 TSTD1Q8NFU3 115 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 OR6K2Q8NGY2 324 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 PIP4K2CQ8TBX8 421 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 CCHCR1Q8TD31 782 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 MRGPRX1Q96LB2 322 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 ZDHHC6Q9H6R6 413 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 PRMT8Q9NR22 394 aaPredicted RBP11.71□□□□□ -0.54
SCN9A-204ENST00000452182 DKK3Q9UBP4 350 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 EBF1Q9UH73 591 aa11.71□□□□□ -0.54
SCN9A-204ENST00000452182 AAR2Q9Y312 384 aaKnown RBP11.71□□□□□ -0.54
SCN9A-204ENST00000452182 KMT2EQ8IZD2 1858 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.7□□□□□ -0.54
SCN9A-204ENST00000452182 TCRBV21S2A2A0A5A6 115 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 TSPAN11A1L157 253 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 CTAGE15A4D2H0 777 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 TRAFD1O14545 582 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms