RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 WNT1P04628 370 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 ADRB1P08588 477 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 KRT7P08729 469 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 SERPINB6P35237 376 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 ZNF75DP51815 510 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 RPS21P63220 83 aaKnown RBP15.4■□□□□ 0.06
LIMS3-201ENST00000437679 IL10RBQ08334 325 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 HNRNPDQ14103 355 aaKnown RBP15.4■□□□□ 0.06
LIMS3-201ENST00000437679 MESDQ14696 234 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 RFTN1Q14699 578 aaPredicted RBP15.4■□□□□ 0.06
LIMS3-201ENST00000437679 GRM3Q14832 879 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 SUZ12Q15022 739 aaKnown RBP15.4■□□□□ 0.06
LIMS3-201ENST00000437679 ZNF284Q2VY69 593 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 N4BP2L1Q5TBK1 243 aaPredicted RBP15.4■□□□□ 0.06
LIMS3-201ENST00000437679 KIAA1161Q6NSJ0 714 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 ZSCAN30Q86W11 494 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 RHOT2Q8IXI1 618 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 TC2NQ8N9U0 490 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 MFSD2AQ8NA29 543 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 KCTD6Q8NC69 237 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 SLC35G2Q8TBE7 412 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 TSC1Q92574 1164 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 KLK6Q92876 244 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 MRFAP1L1Q96HT8 127 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 FEM1CQ96JP0 617 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 EXOC2Q96KP1 924 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 ANP32EQ9BTT0 268 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 CINPQ9BW66 212 aaPredicted RBP15.4■□□□□ 0.06
LIMS3-201ENST00000437679 CPEB1Q9BZB8 566 aaKnown RBP15.4■□□□□ 0.06
LIMS3-201ENST00000437679 GDF3Q9NR23 364 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 TMEM131Q92545 1883 aa15.4■□□□□ 0.06
LIMS3-201ENST00000437679 TP53BP1Q12888 1972 aaPredicted RBP15.39■□□□□ 0.05
LIMS3-201ENST00000437679 TLR4O00206 839 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 KCNK3O14649 394 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 INSIG1O15503 277 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 TSPAN6O43657 245 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 SH3BP5O60239 455 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 PRLRP16471 622 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 AKT2P31751 481 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 ARHGAP25P42331 645 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 CCT8P50990 548 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 TAS2R40P59535 323 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 OVGP1Q12889 678 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 PDK2Q15119 407 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 ZNF423Q2M1K9 1284 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 ZFYVE27Q5T4F4 411 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 ARHGAP36Q6ZRI8 547 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 TTC7BQ86TV6 843 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 IQCHQ86VS3 1027 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 NAXDQ8IW45 347 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 MAP7D3Q8IWC1 876 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 FAM71BQ8TC56 605 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 RFFLQ8WZ73 363 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 CALN1Q9BXU9 219 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 ETNK2Q9NVF9 386 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 INTUQ9ULD6 942 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 ZFR2Q9UPR6 939 aaKnown RBP15.39■□□□□ 0.05
LIMS3-201ENST00000437679 PCDHB9Q9Y5E1 797 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 PCDHGB2Q9Y5G2 931 aa15.39■□□□□ 0.05
LIMS3-201ENST00000437679 H0Y8X5 98 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 MTA2O94776 668 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 CD48P09326 243 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 HNRNPA2B1P22626 353 aaKnown RBP15.38■□□□□ 0.05
LIMS3-201ENST00000437679 XPAP23025 273 aaPredicted RBP15.38■□□□□ 0.05
LIMS3-201ENST00000437679 ABL2P42684 1182 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 CSNK1DP48730 415 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 RENBPP51606 427 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 DPYSL3Q14195 570 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 ATP13A4Q4VNC1 1196 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 TMEM259Q4ZIN3 620 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 CFAP58Q5T655 872 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 TMCO4Q5TGY1 634 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 SEL1L3Q68CR1 1132 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 SRLQ86TD4 932 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 CPNE8Q86YQ8 564 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 TP53INP2Q8IXH6 220 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 ATPAF2Q8N5M1 289 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 TSEN2Q8NCE0 465 aaKnown RBP15.38■□□□□ 0.05
LIMS3-201ENST00000437679 SETD7Q8WTS6 366 aaKnown RBP15.38■□□□□ 0.05
LIMS3-201ENST00000437679 NSMCE1Q8WV22 266 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 ZNF599Q96NL3 588 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 ELF4Q99607 663 aaPredicted RBP15.38■□□□□ 0.05
LIMS3-201ENST00000437679 MYOCQ99972 504 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 SLC17A9Q9BYT1 436 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 DKK3Q9UBP4 350 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 SEPT3Q9UH03 358 aa15.38■□□□□ 0.05
LIMS3-201ENST00000437679 FLRT2O43155 660 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 PIGNO95427 931 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 IL4RP24394 825 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 MAGEA1P43355 309 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 ARSEP51690 589 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 NXPH1P58417 271 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 NSUN2Q08J23 767 aaKnown RBP eCLIP15.37■□□□□ 0.05
LIMS3-201ENST00000437679 MMRN1Q13201 1228 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 SGCGQ13326 291 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 ZNF235Q14590 738 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 LBRQ14739 615 aaKnown RBP15.37■□□□□ 0.05
LIMS3-201ENST00000437679 GAS2L3Q86XJ1 694 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 CCDC170Q8IYT3 715 aa15.37■□□□□ 0.05
LIMS3-201ENST00000437679 BBS5Q8N3I7 341 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms