RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 HIC2Q96JB3 615 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 GPRC5CQ9NQ84 441 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 RBM12Q9NTZ6 932 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 TRPS1Q9UHF7 1281 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 USP20Q9Y2K6 914 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 LIN7AO14910 233 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 SH3BGRLO75368 114 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 SMNDC1O75940 238 aaKnown RBP eCLIP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 PON1P27169 355 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 GSSP48637 474 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 SRP54P61011 504 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 DLG1Q12959 904 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 MKRN4PQ13434 485 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 XKR6Q5GH73 641 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 SENP8Q96LD8 212 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 CATSPER2Q96P56 530 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 IL12RB2Q99665 862 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 APBA2Q99767 749 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 KIAA1522Q9P206 1035 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 WASHC1A8K0Z3 465 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 WASH3PC4AMC7 463 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 PTPN9P43378 593 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ALDH5A1P51649 535 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 USP4Q13107 963 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 SF1Q15637 639 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 OASLQ15646 514 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ZCCHC12Q6PEW1 402 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 WASH2PQ6VEQ5 465 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 GET4Q7L5D6 327 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 DAGLBQ8NCG7 672 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 IGDCC4Q8TDY8 1250 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 CELF4Q9BZC1 486 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 BHLHE41Q9C0J9 482 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 CRTAC1Q9NQ79 661 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 FAM86C2PA6NEL3 165 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 DCLK1O15075 740 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 PHGDHO43175 533 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 UBXN7O94888 489 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 SERPINE1P05121 402 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 NPR3P17342 541 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ALOX12P18054 663 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 MNDAP41218 407 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 AP1S1P61966 158 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 NBPF12Q5TAG4 269 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ZPBP2Q6X784 338 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 SRFBP1Q8NEF9 429 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 OMA1Q96E52 524 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 VCPIP1Q96JH7 1222 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 PPP3R2Q96LZ3 170 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 TMEM121Q9BTD3 319 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ZYG11BQ9C0D3 744 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 SSNA1O43805 119 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 SLC25A14O95258 325 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 CLPTM1O96005 669 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 NQO1P15559 274 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 BLKP51451 505 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ATXN1P54253 815 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 CASP9P55211 416 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 TERF2Q15554 542 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ZNF549Q6P9A3 640 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ATG14Q6ZNE5 492 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 RBM23Q86U06 439 aaKnown RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 JSRP1Q96MG2 331 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 UBAP1Q9NZ09 502 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 CDH7Q9ULB5 785 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ERGIC3Q9Y282 383 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 DDNO94850 711 aaPredicted RBP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 PROSCO94903 275 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 VAPBO95292 243 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 ITIH4Q14624 930 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 MSANTD1Q6ZTZ1 278 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 DENND1CQ8IV53 801 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 UBR7Q8N806 425 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 FATE1Q969F0 183 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 EHD4Q9H223 541 aa11.29□□□□□ -0.6
SCN4A-201ENST00000435607 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.29□□□□□ -0.6
SCN4A-201ENST00000435607 FOXN3O00409 490 aaPredicted RBP11.28□□□□□ -0.6
SCN4A-201ENST00000435607 SLC26A3P40879 764 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 BUD31P41223 144 aaPredicted RBP11.28□□□□□ -0.6
SCN4A-201ENST00000435607 TSGA10IPQ3SY00 556 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 FAM91A1Q658Y4 838 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 CHRDL2Q6WN34 429 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 SLC2A14Q8TDB8 520 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 VPS35Q96QK1 796 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 CHMP1AQ9HD42 196 aaPredicted RBP11.28□□□□□ -0.6
SCN4A-201ENST00000435607 DLGAP2Q9P1A6 1054 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 CHKBQ9Y259 395 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 A0A1W2PRG6 482 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 ACKR2O00590 384 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 GRM6O15303 877 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 RARGP13631 454 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 LAG3P18627 525 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 PPIBP23284 216 aaKnown RBP11.28□□□□□ -0.6
SCN4A-201ENST00000435607 DNASE1L1P49184 302 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 MRPS22P82650 360 aaKnown RBP11.28□□□□□ -0.6
SCN4A-201ENST00000435607 NR1I3Q14994 352 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 TRMT5Q32P41 509 aaKnown RBP11.28□□□□□ -0.6
SCN4A-201ENST00000435607 POM121L1PQ3SYA9 428 aa11.28□□□□□ -0.6
SCN4A-201ENST00000435607 CCNI2Q6ZMN8 369 aaPredicted RBP11.28□□□□□ -0.6
SCN4A-201ENST00000435607 PCDHGA3Q9Y5H0 932 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms