RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PYDC1Q8WXC3 89 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 SLC35C1Q96A29 364 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 VPS35Q96QK1 796 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 TMEM216Q9P0N5 145 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 MYRFQ9Y2G1 1151 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 IDH3BO43837 385 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 CXCL14O95715 111 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 GLRA2P23416 452 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 NAB1Q13506 487 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 DGKZQ13574 1117 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 DGUOKQ16854 277 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 ZIK1Q3SY52 487 aaPredicted RBP15.53■□□□□ 0.08
PTPRF-206ENST00000429895 HDAC7Q8WUI4 952 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 PRRG4Q9BZD6 226 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 GJB1P08034 283 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 CDK16Q00536 496 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 SLC34A1Q06495 639 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 MSLNQ13421 630 aaPredicted RBP15.52■□□□□ 0.08
PTPRF-206ENST00000429895 DIP2AQ14689 1571 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 INO80DQ53TQ3 878 aaPredicted RBP15.52■□□□□ 0.08
PTPRF-206ENST00000429895 ARMC3Q5W041 872 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 DNAJB14Q8TBM8 379 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 GULP1Q9UBP9 304 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 RBM7Q9Y580 266 aaKnown RBP15.52■□□□□ 0.08
PTPRF-206ENST00000429895 PTPRUQ92729 1446 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 NEDD8-MDP1E9PL57 170 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 H3BQF6 201 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 ADH1AP07327 375 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 CHKAP35790 457 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 CDK7P50613 346 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 OFCC1Q8IZS5 231 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 NKAPQ8N5F7 415 aaKnown RBP15.52■□□□□ 0.08
PTPRF-206ENST00000429895 C2orf73Q8N5S3 287 aaPredicted RBP15.52■□□□□ 0.08
PTPRF-206ENST00000429895 MAB21L3Q8N8X9 362 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 MGRN1O60291 552 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 FTH1P02794 183 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 HNMTP50135 292 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 ARF5P84085 180 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 CREMQ03060 361 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 POLNQ7Z5Q5 900 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 BPIFB6Q8NFQ5 453 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 PACSIN3Q9UKS6 424 aa15.52■□□□□ 0.08
PTPRF-206ENST00000429895 ZMYND8Q9ULU4 1186 aaPredicted RBP15.52■□□□□ 0.08
PTPRF-206ENST00000429895 BCORL1Q5H9F3 1711 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3DA0A087WVF3 549 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3IA0A087WXS9 549 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3EA0A087X179 549 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3KA0A087X1G2 549 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 A0A0A0MRY4 1105 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3FA6NER0 549 aaPredicted RBP15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3LB9A6J9 549 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 MCIDASD6RGH6 385 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3HP0C7X1 549 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 NTRK3Q16288 839 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 PSMD5Q16401 504 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3GQ6DHY5 549 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3CQ6IPX1 549 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 APOBEC3HQ6NTF7 200 aaKnown RBP15.52■□□□□ 0.07
PTPRF-206ENST00000429895 FAM151BQ6UXP7 276 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 CATSPERGQ6ZRH7 1159 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 RIOX2Q8IUF8 465 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 TBC1D3Q8IZP1 549 aaPredicted RBP15.52■□□□□ 0.07
PTPRF-206ENST00000429895 CCDC185Q8N715 623 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 NEK7Q8TDX7 302 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 RAD51AP1Q96B01 352 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 SPATA13Q96N96 652 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 ANKZF1Q9H8Y5 726 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 EHD3Q9NZN3 535 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 IRF6O14896 467 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 WARSP23381 471 aaKnown RBP15.52■□□□□ 0.07
PTPRF-206ENST00000429895 CDC42P60953 191 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 EPS8Q12929 822 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 SPANXN2Q5MJ10 180 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 DACT2Q5SW24 774 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 ADHFE1Q8IWW8 467 aa15.52■□□□□ 0.07
PTPRF-206ENST00000429895 SNRNP25Q9BV90 132 aaKnown RBP15.52■□□□□ 0.07
PTPRF-206ENST00000429895 MOB2Q70IA6 237 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 GET4Q7L5D6 327 aaPredicted RBP15.51■□□□□ 0.07
PTPRF-206ENST00000429895 ZCCHC9Q8N567 271 aaKnown RBP15.51■□□□□ 0.07
PTPRF-206ENST00000429895 ATL1Q8WXF7 558 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 ACAT2Q9BWD1 397 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 RHOBTB2Q9BYZ6 727 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 ANGPT4Q9Y264 503 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.51■□□□□ 0.077e-6■■■■□ 23.8
PTPRF-206ENST00000429895 TP73O15350 636 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 CCNYL3P0C7X3 344 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 CSH1P0DML2 217 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 CSH2P0DML3 217 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 ACAP1Q15027 740 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 INTS11Q5TA45 600 aaKnown RBP15.51■□□□□ 0.07
PTPRF-206ENST00000429895 POMZP3Q6PJE2 187 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 KCNK18Q7Z418 384 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 GPR142Q7Z601 462 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 KATNAL2Q8IYT4 538 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 CDYL2Q8N8U2 506 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 ETNPPLQ8TBG4 499 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 C18orf25Q96B23 403 aaPredicted RBP15.51■□□□□ 0.07
PTPRF-206ENST00000429895 OMA1Q96E52 524 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 RACGAP1Q9H0H5 632 aa15.51■□□□□ 0.07
PTPRF-206ENST00000429895 ST3GAL5Q9UNP4 418 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms