RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 LSMEM2Q8N112 164 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 PCDH20Q8N6Y1 951 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 TMEM35BQ8NCS4 154 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 SLC20A1Q8WUM9 679 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 ARHGEF2Q92974 986 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 TSACCQ96A04 125 aaPredicted RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 FUBP1Q96AE4 644 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 CENPTQ96BT3 561 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 LENG8Q96PV6 779 aaPredicted RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 HAPLN3Q96S86 360 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 CCDC3Q9BQI4 270 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 WRAP53Q9BUR4 548 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 LRRC61Q9BV99 259 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 BOCQ9BWV1 1114 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 DPH1Q9BZG8 443 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 CEP44Q9C0F1 390 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 METTL5Q9NRN9 209 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 THSD1Q9NS62 852 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 RRN3Q9NYV6 651 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 SIRPGQ9P1W8 387 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 KIAA1468Q9P260 1216 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 GULP1Q9UBP9 304 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 APOBEC3BQ9UH17 382 aaKnown RBP8.23□□□□□ -1.09
VIM-202ENST00000421459 STAP1Q9ULZ2 295 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 COQ6Q9Y2Z9 468 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 CSNK1G3Q9Y6M4 447 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 BOD1L1Q8NFC6 3051 aa8.23□□□□□ -1.09
VIM-202ENST00000421459 ARID1BQ8NFD5 2236 aaPredicted RBP8.22□□□□□ -1.09
VIM-202ENST00000421459 ZNF462Q96JM2 2506 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 CDRT15L2A8MXV6 281 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 H3BM21 787 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 K7ENP7 123 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 INSIG1O15503 277 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 F9P00740 461 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 TSHRP16473 764 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 CDH5P33151 784 aaPredicted RBP8.22□□□□□ -1.09
VIM-202ENST00000421459 SKOR1P84550 965 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 RHDQ02161 417 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 SLC20A2Q08357 652 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 CLN3Q13286 438 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 MTA1Q13330 715 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 TGIF1Q15583 401 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 KLHL40Q2TBA0 621 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 MYLK3Q32MK0 819 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 CCDC14Q49A88 953 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 ZNF805Q5CZA5 627 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 MIIPQ5JXC2 388 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 FAXCQ5TGI0 409 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 MANEALQ5VSG8 457 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 KLHDC7AQ5VTJ3 777 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 INO80CQ6PI98 192 aaPredicted RBP8.22□□□□□ -1.09
VIM-202ENST00000421459 RBM44Q6ZP01 1051 aaKnown RBP8.22□□□□□ -1.09
VIM-202ENST00000421459 TTC7BQ86TV6 843 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 NLRP14Q86W24 1093 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 ZDHHC17Q8IUH5 632 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 PYROXD2Q8N2H3 581 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 CCDC185Q8N715 623 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 EXD3Q8N9H8 876 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 JOSD2Q8TAC2 188 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 SLC30A5Q8TAD4 765 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 GPT2Q8TD30 523 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 RXFP2Q8WXD0 754 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 FAM81BQ96LP2 452 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 IL12RB2Q99665 862 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 FOXP3Q9BZS1 431 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 NDST4Q9H3R1 872 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 USP29Q9HBJ7 922 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 OR12D3Q9UGF7 316 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 SALL4Q9UJQ4 1053 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 PADI4Q9UM07 663 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 NEU3Q9UQ49 428 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 SSUH2Q9Y2M2 353 aa8.22□□□□□ -1.09
VIM-202ENST00000421459 GTPBP10A4D1E9 387 aaKnown RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 B8ZZF3 427 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 PES1O00541 588 aaKnown RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 AREL1O15033 823 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 TSPAN6O43657 245 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 LZTS3O60299 673 aaPredicted RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 PRKCGP05129 697 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 C6P13671 934 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 PRKCSHP14314 528 aaPredicted RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 TIMP2P16035 220 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 CHRNB2P17787 502 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 ADRA1BP35368 520 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 EIF4A3P38919 411 aaKnown RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 KLK7P49862 253 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 THOP1P52888 689 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 UCNP55089 124 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 SNX16P57768 344 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 NOMO3P69849 1222 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 CCL7P80098 99 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 NFKB2Q00653 900 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 IRF4Q15306 451 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 MAN2A1Q16706 1144 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 VWA3BQ502W6 1294 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 C6orf132Q5T0Z8 1188 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 GDPD4Q6W3E5 623 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 ZNF783Q6ZMS7 281 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 CCDC81Q6ZN84 652 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 RD3Q7Z3Z2 195 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms