RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 RFX6Q8HWS3 928 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 OR2T34Q8NGX1 318 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 C1orf216Q8TAB5 229 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.9■□□□□ 0.62
PTCD3-204ENST00000418628 UBE2Q2Q8WVN8 375 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 SPOCK2Q92563 424 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 PPP1R16AQ96I34 528 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 OMDQ99983 421 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 NCDNQ9UBB6 729 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 AMFRQ9UKV5 643 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 GUCA1BQ9UMX6 200 aa18.9■□□□□ 0.62
PTCD3-204ENST00000418628 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.9■□□□□ 0.62
PTCD3-204ENST00000418628 KRIT1O00522 736 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 MATN3O15232 486 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 FTCDO95954 541 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 PECAM1P16284 738 aaPredicted RBP18.89■□□□□ 0.61
PTCD3-204ENST00000418628 ITPKAP23677 461 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 DPP6P42658 865 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 RWDD2BP57060 319 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 TFDP2Q14188 446 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 GRM3Q14832 879 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 POM121L1PQ3SYA9 428 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 ZNF805Q5CZA5 627 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 TIGD7Q6NT04 549 aaPredicted RBP18.89■□□□□ 0.61
PTCD3-204ENST00000418628 NCEH1Q6PIU2 408 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 NPNTQ6UXI9 565 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 ERN2Q76MJ5 926 aaKnown RBP18.89■□□□□ 0.61
PTCD3-204ENST00000418628 ARMCX6Q7L4S7 300 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 CYP2U1Q7Z449 544 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 ALYREFQ86V81 257 aaKnown RBP18.89■□□□□ 0.61
PTCD3-204ENST00000418628 DCLK2Q8N568 766 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 ECHDC3Q96DC8 303 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 TUBGCP5Q96RT8 1024 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 ARRDC1-AS1Q9H2J1 176 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 TMEM74BQ9NUR3 256 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 DKK3Q9UBP4 350 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 AMACRQ9UHK6 382 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 PACSIN2Q9UNF0 486 aaPredicted RBP18.89■□□□□ 0.61
PTCD3-204ENST00000418628 MYLKQ15746 1914 aa18.89■□□□□ 0.61
PTCD3-204ENST00000418628 TDRD6O60522 2096 aaKnown RBP18.89■□□□□ 0.61
PTCD3-204ENST00000418628 LATO43561 262 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 CST8O60676 142 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 GJB3O75712 270 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 UGT2B4P06133 528 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 ADRB3P13945 408 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 MMP13P45452 471 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 NR2C2P49116 596 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 RENBPP51606 427 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 CCR5P51681 352 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 NEK3P51956 506 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 IFI35P80217 286 aaPredicted RBP18.88■□□□□ 0.61
PTCD3-204ENST00000418628 RAD51Q06609 339 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 ZNF235Q14590 738 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 PRKD1Q15139 912 aaPredicted RBP18.88■□□□□ 0.61
PTCD3-204ENST00000418628 RALGPS1Q5JS13 557 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 KIAA0895LQ68EN5 471 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.88■□□□□ 0.61
PTCD3-204ENST00000418628 SRLQ86TD4 932 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 TRIM69Q86WT6 500 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 SYT12Q8IV01 421 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 DEFB119Q8N690 84 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 HCAR2Q8TDS4 363 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 LGMNQ99538 433 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 MAK16Q9BXY0 300 aaKnown RBP18.88■□□□□ 0.61
PTCD3-204ENST00000418628 PREBQ9HCU5 417 aa18.88■□□□□ 0.61
PTCD3-204ENST00000418628 TPX2Q9ULW0 747 aaKnown RBP18.88■□□□□ 0.61
PTCD3-204ENST00000418628 ZNF106Q9H2Y7 1883 aaKnown RBP18.88■□□□□ 0.61
PTCD3-204ENST00000418628 LRRC72A6NJI9 287 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 C16orf96A6NNT2 1141 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 TRAFD1O14545 582 aaPredicted RBP18.87■□□□□ 0.61
PTCD3-204ENST00000418628 AP1G1O43747 822 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 PIGNO95427 931 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 ZNF806P0C7X5 589 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 PYGMP11217 842 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 ABL2P42684 1182 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 MAPK8P45983 427 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 AP1S1P61966 158 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 PPP2CBP62714 309 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 DYNLT1P63172 113 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 PPP2CAP67775 309 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 CREB5Q02930 508 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 PDK1Q15118 436 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 CSRP2Q16527 193 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 ODF2Q5BJF6 829 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 MARC1Q5VT66 337 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 GDPD4Q6W3E5 623 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 CCDC50Q8IVM0 306 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 CCDC13Q8IYE1 715 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 ANP32BQ92688 251 aaKnown RBP18.87■□□□□ 0.61
PTCD3-204ENST00000418628 BIRC7Q96CA5 298 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 ZNF641Q96N77 438 aaPredicted RBP18.87■□□□□ 0.61
PTCD3-204ENST00000418628 ZNF830Q96NB3 372 aaPredicted RBP18.87■□□□□ 0.61
PTCD3-204ENST00000418628 NUDCD1Q96RS6 583 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 IL12RB2Q99665 862 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 BRD8Q9H0E9 1235 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 LZTFL1Q9NQ48 299 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 HEY1Q9Y5J3 304 aa18.87■□□□□ 0.61
PTCD3-204ENST00000418628 ATXN2Q99700 1313 aaKnown RBP18.86■□□□□ 0.61
PTCD3-204ENST00000418628 APOC4-APOC2K7ER74 178 aa18.86■□□□□ 0.61
PTCD3-204ENST00000418628 PPP1R12AO14974 1030 aaPredicted RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms