RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 NSMCE3Q96MG7 304 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 TUBGCP5Q96RT8 1024 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 RBM15Q96T37 977 aaKnown RBP eCLIP14.43□□□□□ -0.1
SF3B1-204ENST00000414963 CPEB1Q9BZB8 566 aaKnown RBP14.43□□□□□ -0.1
SF3B1-204ENST00000414963 PHACTR1Q9C0D0 580 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 TSPYL1Q9H0U9 437 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 NEUROG2Q9H2A3 272 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 SCUBE2Q9NQ36 999 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 WNT16Q9UBV4 365 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 NFU1Q9UMS0 254 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 ARIH1Q9Y4X5 557 aaPredicted RBP14.43□□□□□ -0.1
SF3B1-204ENST00000414963 SHROOM3Q8TF72 1996 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 TICRRQ7Z2Z1 1910 aa14.43□□□□□ -0.1
SF3B1-204ENST00000414963 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.42□□□□□ -0.1
SF3B1-204ENST00000414963 LOC285095A0A1B0GVY8 99 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 TTC34A8MYJ7 566 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 AP3B1O00203 1094 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 PPFIA2O75334 1257 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 GJB3O75712 270 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 MT-CYBP00156 380 aaPredicted RBP14.42□□□□□ -0.1
SF3B1-204ENST00000414963 MAGEA3P43357 314 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 HLTFQ14527 1009 aaKnown RBP eCLIP14.42□□□□□ -0.1
SF3B1-204ENST00000414963 GRM3Q14832 879 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 BRD3Q15059 726 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 PON2Q15165 354 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 MLF2Q15773 248 aaPredicted RBP14.42□□□□□ -0.1
SF3B1-204ENST00000414963 ACCSLQ4AC99 568 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 ATXN7L2Q5T6C5 722 aaPredicted RBP14.42□□□□□ -0.1
SF3B1-204ENST00000414963 RNF135Q8IUD6 432 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 UBALD2Q8IYN6 164 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 SPOCK2Q92563 424 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 FEM1CQ96JP0 617 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 EXOC2Q96KP1 924 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 MRGPRX2Q96LB1 330 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 FMO2Q99518 471 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 TNKS2Q9H2K2 1166 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 ARNT2Q9HBZ2 717 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 XAB2Q9HCS7 855 aaKnown RBP14.42□□□□□ -0.1
SF3B1-204ENST00000414963 UBP1Q9NZI7 540 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 MTRF1LQ9UGC7 380 aaKnown RBP14.42□□□□□ -0.1
SF3B1-204ENST00000414963 SUN2Q9UH99 717 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 UNC80Q8N2C7 3258 aa14.42□□□□□ -0.1
SF3B1-204ENST00000414963 UQCRHLA0A096LP55 91 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 EDDM13A0A1B0GTR0 161 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 TTC24A2A3L6 582 aaPredicted RBP14.41□□□□□ -0.1
SF3B1-204ENST00000414963 F5H423 210 aaPredicted RBP14.41□□□□□ -0.1
SF3B1-204ENST00000414963 EIF3HO15372 352 aaKnown RBP eCLIP14.41□□□□□ -0.1
SF3B1-204ENST00000414963 SOCS5O75159 536 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 PMPCBO75439 489 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 EGFP01133 1207 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 UQCRHP07919 91 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 MYBL2P10244 700 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 LMAN1P49257 510 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 FBXO43Q4G163 708 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 FNDC3BQ53EP0 1204 aaKnown RBP14.41□□□□□ -0.1
SF3B1-204ENST00000414963 EMC10Q5UCC4 262 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 EGFLAMQ63HQ2 1017 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 NAPEPLDQ6IQ20 393 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 LRRC8BQ6P9F7 803 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 DPY19L3Q6ZPD9 716 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 CEP128Q6ZU80 1094 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 TPRG1Q6ZUI0 275 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 ZNF534Q76KX8 674 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 CAND1Q86VP6 1230 aaKnown RBP14.41□□□□□ -0.1
SF3B1-204ENST00000414963 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.41□□□□□ -0.1
SF3B1-204ENST00000414963 FAM3CQ92520 227 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 PTPRN2Q92932 1015 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 LRIG1Q96JA1 1093 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 TRIB3Q96RU7 358 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 TM6SF2Q9BZW4 377 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 CASS4Q9NQ75 786 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 MYO10Q9HD67 2058 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 F5P12259 2224 aa14.41□□□□□ -0.1
SF3B1-204ENST00000414963 CCDC151A5D8V7 595 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 E7ESA3 106 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 TRAFD1O14545 582 aaPredicted RBP14.4□□□□□ -0.1
SF3B1-204ENST00000414963 ALOX15BO15296 676 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 HTRA2O43464 458 aaPredicted RBP14.4□□□□□ -0.1
SF3B1-204ENST00000414963 FZD6O60353 706 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 AGTP01019 485 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 CA4P22748 312 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 IL12RB1P42701 662 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 RECQLP46063 649 aaPredicted RBP14.4□□□□□ -0.1
SF3B1-204ENST00000414963 CCNHP51946 323 aaPredicted RBP14.4□□□□□ -0.1
SF3B1-204ENST00000414963 ARL4CP56559 192 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 STARD6P59095 220 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 RPL26P61254 145 aaKnown RBP14.4□□□□□ -0.1
SF3B1-204ENST00000414963 MRPS21P82921 87 aaKnown RBP14.4□□□□□ -0.1
SF3B1-204ENST00000414963 RAD51Q06609 339 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 CDK18Q07002 472 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 CCINQ13939 588 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 HSF5Q4G112 596 aaPredicted RBP14.4□□□□□ -0.1
SF3B1-204ENST00000414963 C9orf64Q5T6V5 341 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 ARMC3Q5W041 872 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 DENND5AQ6IQ26 1287 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 SERPINA13PQ6UXR4 307 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 ZNF852Q6ZMS4 543 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 Q6ZVU0 165 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 RELL1Q8IUW5 271 aa14.4□□□□□ -0.1
SF3B1-204ENST00000414963 PDIK1LQ8N165 341 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms