RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CAPRIN1Q14444 709 aaKnown RBP21.2■□□□□ 0.98
CTCF-202ENST00000401394 MARCH8Q5T0T0 291 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 CHSY3Q70JA7 882 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 FAM35AQ86V20 835 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 NPY6RQ99463 290 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 DUS2Q9NX74 493 aaKnown RBP21.2■□□□□ 0.98
CTCF-202ENST00000401394 RBPJLQ9UBG7 517 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 ZNF711Q9Y462 761 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 FAM95CA0A1B0GW59 222 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 LRRC14BA6NHZ5 514 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 DFFAO00273 331 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 AKAP10O43572 662 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 PMPCBO75439 489 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 HNRNPCP07910 306 aaKnown RBP eCLIP21.2■□□□□ 0.98
CTCF-202ENST00000401394 KCNC1P48547 511 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 AFF1P51825 1210 aaKnown RBP21.2■□□□□ 0.98
CTCF-202ENST00000401394 SLC7A2P52569 658 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 ARHGAP1Q07960 439 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 FBXO47Q5MNV8 452 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 C6orf10Q5SRN2 563 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 ANKRD23Q86SG2 305 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 CLVS1Q8IUQ0 354 aaPredicted RBP21.2■□□□□ 0.98
CTCF-202ENST00000401394 C3orf30Q96M34 536 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 DDIT4Q9NX09 232 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 ADAM28Q9UKQ2 775 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 ACOT9Q9Y305 439 aa21.2■□□□□ 0.98
CTCF-202ENST00000401394 TRIM38O00635 465 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 TIMM44O43615 452 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 ZBTB7AO95365 584 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 ATP6V1B2P21281 511 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 SLC1A2P43004 574 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 ZFP1Q6P2D0 407 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 MEIS3P2A8K0S8 358 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 HTRA2O43464 458 aaPredicted RBP21.19■□□□□ 0.98
CTCF-202ENST00000401394 CABYRO75952 493 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 APLP1P51693 650 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 SEPT6Q14141 434 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 FASTKQ14296 549 aaKnown RBP21.19■□□□□ 0.98
CTCF-202ENST00000401394 LPIN1Q14693 890 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 C16orf72Q14CZ0 275 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 PAFAH1B3Q15102 231 aaKnown RBP21.19■□□□□ 0.98
CTCF-202ENST00000401394 DEFB132Q7Z7B7 95 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 ZNF786Q8N393 782 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 FIBCD1Q8N539 461 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 NAT16Q8N8M0 369 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 MED10Q9BTT4 135 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 WDR6Q9NNW5 1121 aaKnown RBP21.19■□□□□ 0.98
CTCF-202ENST00000401394 NDFIP2Q9NV92 336 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 NUDT5Q9UKK9 219 aa21.19■□□□□ 0.98
CTCF-202ENST00000401394 ADM5C9JUS6 153 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 UBFD1O14562 309 aaKnown RBP21.18■□□□□ 0.98
CTCF-202ENST00000401394 SUPT3HO75486 399 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 H6PDO95479 791 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 PCSK7Q16549 785 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 FAM187BQ17R55 369 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 RWDD4Q6NW29 188 aaKnown RBP21.18■□□□□ 0.98
CTCF-202ENST00000401394 CATSPER4Q7RTX7 472 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 ITFG2Q969R8 447 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 FBXL20Q96IG2 436 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 SNX27Q96L92 541 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 OLFM1Q99784 485 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 PIF1Q9H611 641 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 LRRC4Q9HBW1 653 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 PIM2Q9P1W9 311 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 DOLKQ9UPQ8 538 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 SETSIPP0DME0 302 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 CD247P20963 164 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 FUT4P22083 530 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 NAB1Q13506 487 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 DCTN2Q13561 401 aaKnown RBP21.18■□□□□ 0.98
CTCF-202ENST00000401394 LRP8Q14114 963 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 KCTD21Q4G0X4 260 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 WSCD1Q658N2 575 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 ZNF470Q6ECI4 717 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 POTEHQ6S545 545 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 ZBTB49Q6ZSB9 765 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 RETREG3Q86VR2 466 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 CARM1Q86X55 608 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 TMEM40Q8WWA1 233 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 ASB9Q96DX5 294 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 YBX3P16989 372 aaKnown RBP eCLIP21.18■□□□□ 0.983e-9■□□□□ 9.6
CTCF-202ENST00000401394 ELMSAN1Q6PJG2 1045 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 CYHR1Q6ZMK1 362 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 ZDHHC17Q8IUH5 632 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 SPPL2CQ8IUH8 684 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 CBR4Q8N4T8 237 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 B3GALNT2Q8NCR0 500 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 ARRDC4Q8NCT1 418 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 ANKRD49Q8WVL7 239 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 SREK1Q8WXA9 508 aaKnown RBP21.18■□□□□ 0.98
CTCF-202ENST00000401394 WNT8BQ93098 351 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 ZFP42Q96MM3 310 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 GBA3Q9H227 469 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 RHOJQ9H4E5 214 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 DSEQ9UL01 958 aa21.18■□□□□ 0.98
CTCF-202ENST00000401394 ZNF487B1APH4 448 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 H3BNH8 94 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 GRM5P41594 1212 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 PRKCQQ04759 706 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 SLC12A1Q13621 1099 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms